Cluster: HRGMv2_2693_CGC14
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_2693
- CGC Family ID: CGCFAM_00006
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2693_19 | HRGMv2_2693_19_12 | 9106 | 9735 | + | 9.B.18.1.2 |
| CAZyme | HRGMv2_2693_19 | HRGMv2_2693_19_13 | 9725 | 10816 | + | GT4 |
| TC | HRGMv2_2693_19 | HRGMv2_2693_19_14 | 10845 | 11996 | + | 9.B.183.1.9 |
| CAZyme | HRGMv2_2693_19 | HRGMv2_2693_19_15 | 12132 | 13100 | + | GT2 |
| CAZyme | HRGMv2_2693_19 | HRGMv2_2693_19_16 | 13112 | 14002 | + | GT2 |
| CAZyme | HRGMv2_2693_19 | HRGMv2_2693_19_17 | 13999 | 14520 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_2693_19 | HRGMv2_2693_19_18 | 14530 | 14898 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2693_19 | HRGMv2_2693_19_19 | 15018 | 16130 | + | GT4 |
| CAZyme | HRGMv2_2693_19 | HRGMv2_2693_19_20 | 16144 | 17337 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_2693_19 | HRGMv2_2693_19_21 | 17375 | 18616 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2693_19 | HRGMv2_2693_19_22 | 18620 | 19588 | + | GT2 |
| pfam | HRGMv2_2693_19 | HRGMv2_2693_19_23 | 19590 | 20681 | + | Epimerase_2 |
| pfam | HRGMv2_2693_19 | HRGMv2_2693_19_24 | 20684 | 21238 | + | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_2693_19 | HRGMv2_2693_19_25 | 21253 | 22257 | + | GT2 |
Gene ID: HRGMv2_2693_19_12
Type: TC
Location: 9106 - 9735 (+)
Type: TC
Location: 9106 - 9735 (+)
Gene ID: HRGMv2_2693_19_13
Type: CAZyme
Location: 9725 - 10816 (+)
Type: CAZyme
Location: 9725 - 10816 (+)
Gene ID: HRGMv2_2693_19_14
Type: TC
Location: 10845 - 11996 (+)
Type: TC
Location: 10845 - 11996 (+)
Gene ID: HRGMv2_2693_19_15
Type: CAZyme
Location: 12132 - 13100 (+)
Type: CAZyme
Location: 12132 - 13100 (+)
Gene ID: HRGMv2_2693_19_16
Type: CAZyme
Location: 13112 - 14002 (+)
Type: CAZyme
Location: 13112 - 14002 (+)
Gene ID: HRGMv2_2693_19_17
Type: CAZyme
Location: 13999 - 14520 (+)
Type: CAZyme
Location: 13999 - 14520 (+)
Gene ID: HRGMv2_2693_19_18
Type:
Location: 14530 - 14898 (+)
Type:
Location: 14530 - 14898 (+)
Gene ID: HRGMv2_2693_19_19
Type: CAZyme
Location: 15018 - 16130 (+)
Type: CAZyme
Location: 15018 - 16130 (+)
Gene ID: HRGMv2_2693_19_20
Type: CAZyme
Location: 16144 - 17337 (+)
Type: CAZyme
Location: 16144 - 17337 (+)
Gene ID: HRGMv2_2693_19_21
Type:
Location: 17375 - 18616 (+)
Type:
Location: 17375 - 18616 (+)
Gene ID: HRGMv2_2693_19_22
Type: CAZyme
Location: 18620 - 19588 (+)
Type: CAZyme
Location: 18620 - 19588 (+)
Gene ID: HRGMv2_2693_19_23
Type: pfam
Location: 19590 - 20681 (+)
Type: pfam
Location: 19590 - 20681 (+)
Gene ID: HRGMv2_2693_19_24
Type: pfam
Location: 20684 - 21238 (+)
Type: pfam
Location: 20684 - 21238 (+)
Gene ID: HRGMv2_2693_19_25
Type: CAZyme
Location: 21253 - 22257 (+)
Type: CAZyme
Location: 21253 - 22257 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E bromii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.