Cluster: HRGMv2_2693_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2693
- CGC Family ID: CGCFAM_02981
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2693_15 | HRGMv2_2693_15_14 | 13039 | 13995 | - | 3.A.1.132.1 |
| pfam | HRGMv2_2693_15 | HRGMv2_2693_15_15 | 14261 | 14614 | + | SpoVAC_SpoVAEB |
| TC | HRGMv2_2693_15 | HRGMv2_2693_15_16 | 14740 | 17478 | - | 9.B.144.1.5 |
| NULL(UNKNOWN) | HRGMv2_2693_15 | HRGMv2_2693_15_17 | 17558 | 17788 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2693_15 | HRGMv2_2693_15_18 | 17916 | 18890 | + | GT2 |
Gene ID: HRGMv2_2693_15_14
Type: TC
Location: 13039 - 13995 (-)
Type: TC
Location: 13039 - 13995 (-)
Gene ID: HRGMv2_2693_15_15
Type: pfam
Location: 14261 - 14614 (+)
Type: pfam
Location: 14261 - 14614 (+)
Gene ID: HRGMv2_2693_15_16
Type: TC
Location: 14740 - 17478 (-)
Type: TC
Location: 14740 - 17478 (-)
Gene ID: HRGMv2_2693_15_17
Type:
Location: 17558 - 17788 (-)
Type:
Location: 17558 - 17788 (-)
Gene ID: HRGMv2_2693_15_18
Type: CAZyme
Location: 17916 - 18890 (+)
Type: CAZyme
Location: 17916 - 18890 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E bromii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2693_15_15 | vegetarian > vegan | 1.33962 | 0.01810 |