Cluster: HRGMv2_2693_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2693
- CGC Family ID: CGCFAM_05520
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2693_14 | HRGMv2_2693_14_17 | 18822 | 19562 | - | 3.A.1.3.15 |
| TC | HRGMv2_2693_14 | HRGMv2_2693_14_18 | 19552 | 21078 | - | 3.A.1.3.20 |
| pfam | HRGMv2_2693_14 | HRGMv2_2693_14_19 | 21127 | 22299 | - | malic | Malic_M |
| CAZyme | HRGMv2_2693_14 | HRGMv2_2693_14_20 | 22994 | 25591 | + | GH13_28 |
Gene ID: HRGMv2_2693_14_17
Type: TC
Location: 18822 - 19562 (-)
Type: TC
Location: 18822 - 19562 (-)
Gene ID: HRGMv2_2693_14_18
Type: TC
Location: 19552 - 21078 (-)
Type: TC
Location: 19552 - 21078 (-)
Gene ID: HRGMv2_2693_14_19
Type: pfam
Location: 21127 - 22299 (-)
Type: pfam
Location: 21127 - 22299 (-)
Gene ID: HRGMv2_2693_14_20
Type: CAZyme
Location: 22994 - 25591 (+)
Type: CAZyme
Location: 22994 - 25591 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E bromii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2693_14_17 | vegan > omnivore | 2.28627 | 0.00324 |
| HRGMv2_2693_14_19 | vegan > omnivore | 2.34642 | 0.00085 |
| HRGMv2_2693_14_19 | vegetarian > omnivore | 1.77519 | 0.00290 |