Cluster: HRGMv2_2693_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2693
- CGC Family ID: CGCFAM_05519
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2693_9 | HRGMv2_2693_9_78 | 73948 | 76161 | + | 3.A.7.16.1 |
| STP | HRGMv2_2693_9 | HRGMv2_2693_9_79 | 76145 | 76807 | + | Pribosyltran |
| TC | HRGMv2_2693_9 | HRGMv2_2693_9_80 | 76844 | 77860 | + | 9.B.157.1.1 |
| NULL(UNKNOWN) | HRGMv2_2693_9 | HRGMv2_2693_9_81 | 78066 | 78644 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2693_9 | HRGMv2_2693_9_82 | 78819 | 82010 | - | GH13_28 |
Gene ID: HRGMv2_2693_9_78
Type: TC
Location: 73948 - 76161 (+)
Type: TC
Location: 73948 - 76161 (+)
Gene ID: HRGMv2_2693_9_79
Type: STP
Location: 76145 - 76807 (+)
Type: STP
Location: 76145 - 76807 (+)
Gene ID: HRGMv2_2693_9_80
Type: TC
Location: 76844 - 77860 (+)
Type: TC
Location: 76844 - 77860 (+)
Gene ID: HRGMv2_2693_9_81
Type:
Location: 78066 - 78644 (-)
Type:
Location: 78066 - 78644 (-)
Gene ID: HRGMv2_2693_9_82
Type: CAZyme
Location: 78819 - 82010 (-)
Type: CAZyme
Location: 78819 - 82010 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E bromii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2693_9_78 | vegetarian > vegan | 1.02774 | 0.01810 |
| HRGMv2_2693_9_79 | vegetarian > vegan | 1.84391 | 0.00611 |
| HRGMv2_2693_9_80 | vegetarian > vegan | 1.89210 | 0.00611 |