Cluster: HRGMv2_2685_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2685
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2685_18 | HRGMv2_2685_18_8 | 9017 | 10870 | - | 9.B.34.1.2 |
| CAZyme | HRGMv2_2685_18 | HRGMv2_2685_18_9 | 11636 | 12373 | + | CE4 |
| TF | HRGMv2_2685_18 | HRGMv2_2685_18_10 | 12380 | 13225 | - | MerR |
| peptidase | HRGMv2_2685_18 | HRGMv2_2685_18_11 | 13362 | 14765 | - | M18.UPW |
| CAZyme | HRGMv2_2685_18 | HRGMv2_2685_18_12 | 14790 | 15455 | - | GH23 |
Gene ID: HRGMv2_2685_18_8
Type: TC
Location: 9017 - 10870 (-)
Type: TC
Location: 9017 - 10870 (-)
Gene ID: HRGMv2_2685_18_9
Type: CAZyme
Location: 11636 - 12373 (+)
Type: CAZyme
Location: 11636 - 12373 (+)
Gene ID: HRGMv2_2685_18_10
Type: TF
Location: 12380 - 13225 (-)
Type: TF
Location: 12380 - 13225 (-)
Gene ID: HRGMv2_2685_18_11
Type: peptidase
Location: 13362 - 14765 (-)
Type: peptidase
Location: 13362 - 14765 (-)
Gene ID: HRGMv2_2685_18_12
Type: CAZyme
Location: 14790 - 15455 (-)
Type: CAZyme
Location: 14790 - 15455 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.