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Cluster: HRGMv2_2685_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2685_14 HRGMv2_2685_14_15 11698 12915 + 2.A.103.1.7
TC HRGMv2_2685_14 HRGMv2_2685_14_16 13079 13663 - 3.A.1.19.1
pfam HRGMv2_2685_14 HRGMv2_2685_14_17 13657 14427 - BPD_transp_1
TC HRGMv2_2685_14 HRGMv2_2685_14_18 14639 15919 + 2.A.26.1.2
pfam HRGMv2_2685_14 HRGMv2_2685_14_19 15933 16343 + Pep_deformylase
TC HRGMv2_2685_14 HRGMv2_2685_14_20 16421 17287 - 3.A.1.1.48
TC HRGMv2_2685_14 HRGMv2_2685_14_21 17290 18267 - 3.A.1.1.4
NULL(UNKNOWN) HRGMv2_2685_14 HRGMv2_2685_14_22 18365 19810 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2685_14 HRGMv2_2685_14_23 19889 20896 - LacI
CAZyme HRGMv2_2685_14 HRGMv2_2685_14_24 21424 23859 + GH94
Gene ID: HRGMv2_2685_14_15
Type: TC
Location: 11698 - 12915 (+)
Gene ID: HRGMv2_2685_14_16
Type: TC
Location: 13079 - 13663 (-)
Gene ID: HRGMv2_2685_14_17
Type: pfam
Location: 13657 - 14427 (-)
Gene ID: HRGMv2_2685_14_18
Type: TC
Location: 14639 - 15919 (+)
Gene ID: HRGMv2_2685_14_19
Type: pfam
Location: 15933 - 16343 (+)
Gene ID: HRGMv2_2685_14_20
Type: TC
Location: 16421 - 17287 (-)
Gene ID: HRGMv2_2685_14_21
Type: TC
Location: 17290 - 18267 (-)
Gene ID: HRGMv2_2685_14_22
Type:
Location: 18365 - 19810 (-)
Gene ID: HRGMv2_2685_14_23
Type: TF
Location: 19889 - 20896 (-)
Gene ID: HRGMv2_2685_14_24
Type: CAZyme
Location: 21424 - 23859 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Faecalibacterium
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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