Cluster: HRGMv2_2685_CGC2
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2685
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2685_5 | HRGMv2_2685_5_11 | 10839 | 11537 | - | 3.A.1.132.6 |
| TF | HRGMv2_2685_5 | HRGMv2_2685_5_12 | 11530 | 11907 | - | GntR |
| CAZyme | HRGMv2_2685_5 | HRGMv2_2685_5_13 | 12130 | 13131 | + | GT2 |
Gene ID: HRGMv2_2685_5_11
Type: TC
Location: 10839 - 11537 (-)
Type: TC
Location: 10839 - 11537 (-)
Gene ID: HRGMv2_2685_5_12
Type: TF
Location: 11530 - 11907 (-)
Type: TF
Location: 11530 - 11907 (-)
Gene ID: HRGMv2_2685_5_13
Type: CAZyme
Location: 12130 - 13131 (+)
Type: CAZyme
Location: 12130 - 13131 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2685_5_12 | vegan > omnivore | 1.11871 | 0.02421 |