Cluster: HRGMv2_2685_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2685
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2685_81 | HRGMv2_2685_81_2 | 317 | 1630 | + | 2.A.103.1.3 |
| CAZyme | HRGMv2_2685_81 | HRGMv2_2685_81_3 | 1686 | 2813 | + | GT28 |
| pfam | HRGMv2_2685_81 | HRGMv2_2685_81_4 | 2851 | 4398 | + | POTRA_1 |
| pfam | HRGMv2_2685_81 | HRGMv2_2685_81_5 | 4422 | 5900 | + | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_2685_81 | HRGMv2_2685_81_6 | 6144 | 6371 | + | 3.D.1.6.4 |
Gene ID: HRGMv2_2685_81_2
Type: TC
Location: 317 - 1630 (+)
Type: TC
Location: 317 - 1630 (+)
Gene ID: HRGMv2_2685_81_3
Type: CAZyme
Location: 1686 - 2813 (+)
Type: CAZyme
Location: 1686 - 2813 (+)
Gene ID: HRGMv2_2685_81_4
Type: pfam
Location: 2851 - 4398 (+)
Type: pfam
Location: 2851 - 4398 (+)
Gene ID: HRGMv2_2685_81_5
Type: pfam
Location: 4422 - 5900 (+)
Type: pfam
Location: 4422 - 5900 (+)
Gene ID: HRGMv2_2685_81_6
Type: TC
Location: 6144 - 6371 (+)
Type: TC
Location: 6144 - 6371 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.