Cluster: HRGMv2_2685_CGC18
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2685
- CGC Family ID: CGCFAM_00688
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2685_78 | HRGMv2_2685_78_1 | 3 | 434 | - | 9.B.10.1.1 |
| peptidase | HRGMv2_2685_78 | HRGMv2_2685_78_2 | 885 | 2684 | + | M24.UPB |
| TF | HRGMv2_2685_78 | HRGMv2_2685_78_3 | 2865 | 3584 | + | LytTR |
| CAZyme | HRGMv2_2685_78 | HRGMv2_2685_78_4 | 3651 | 4574 | - | GT2 |
| CAZyme | HRGMv2_2685_78 | HRGMv2_2685_78_5 | 4595 | 5638 | - | GT2 |
| pfam | HRGMv2_2685_78 | HRGMv2_2685_78_6 | 5790 | 6440 | - | Hydrolase | HAD | HAD_2 |
| pfam | HRGMv2_2685_78 | HRGMv2_2685_78_7 | 6621 | 7802 | + | Patatin |
| TC | HRGMv2_2685_78 | HRGMv2_2685_78_8 | 7789 | 9420 | + | 8.A.7.1.5 |
Gene ID: HRGMv2_2685_78_1
Type: TC
Location: 3 - 434 (-)
Type: TC
Location: 3 - 434 (-)
Gene ID: HRGMv2_2685_78_2
Type: peptidase
Location: 885 - 2684 (+)
Type: peptidase
Location: 885 - 2684 (+)
Gene ID: HRGMv2_2685_78_3
Type: TF
Location: 2865 - 3584 (+)
Type: TF
Location: 2865 - 3584 (+)
Gene ID: HRGMv2_2685_78_4
Type: CAZyme
Location: 3651 - 4574 (-)
Type: CAZyme
Location: 3651 - 4574 (-)
Gene ID: HRGMv2_2685_78_5
Type: CAZyme
Location: 4595 - 5638 (-)
Type: CAZyme
Location: 4595 - 5638 (-)
Gene ID: HRGMv2_2685_78_6
Type: pfam
Location: 5790 - 6440 (-)
Type: pfam
Location: 5790 - 6440 (-)
Gene ID: HRGMv2_2685_78_7
Type: pfam
Location: 6621 - 7802 (+)
Type: pfam
Location: 6621 - 7802 (+)
Gene ID: HRGMv2_2685_78_8
Type: TC
Location: 7789 - 9420 (+)
Type: TC
Location: 7789 - 9420 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.