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Cluster: HRGMv2_2685_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2685_1 HRGMv2_2685_1_23 22257 22724 + 4.A.6.1.3
TC HRGMv2_2685_1 HRGMv2_2685_1_24 22756 23565 + 4.A.6.1.3
TC HRGMv2_2685_1 HRGMv2_2685_1_25 23581 24417 + 4.A.6.1.19
STP HRGMv2_2685_1 HRGMv2_2685_1_26 24504 25487 + SIS
pfam HRGMv2_2685_1 HRGMv2_2685_1_27 25568 26194 + Hydrolase | HAD_2
TC HRGMv2_2685_1 HRGMv2_2685_1_28 26196 27089 + 2.A.115.1.1
TF HRGMv2_2685_1 HRGMv2_2685_1_29 27222 28106 - HTH_AraC | HTH_AraC
pfam HRGMv2_2685_1 HRGMv2_2685_1_30 28357 28932 + YcxB
TC HRGMv2_2685_1 HRGMv2_2685_1_31 29018 30052 + 2.A.56.1.5
TC HRGMv2_2685_1 HRGMv2_2685_1_32 30154 30642 + 2.A.56.1.5
TC HRGMv2_2685_1 HRGMv2_2685_1_33 30642 31961 + 2.A.56.1.5
CAZyme HRGMv2_2685_1 HRGMv2_2685_1_34 32081 34576 + GH31_2
CAZyme HRGMv2_2685_1 HRGMv2_2685_1_35 34598 37114 + GH31_2
TC HRGMv2_2685_1 HRGMv2_2685_1_36 37204 38580 - 2.A.66.1.33
TF HRGMv2_2685_1 HRGMv2_2685_1_37 38750 39775 - LacI
TC HRGMv2_2685_1 HRGMv2_2685_1_38 40059 41741 + 4.A.1.1.11
pfam HRGMv2_2685_1 HRGMv2_2685_1_39 41748 42566 + Exo_endo_phos
CAZyme HRGMv2_2685_1 HRGMv2_2685_1_40 42577 44085 + GH77
TF HRGMv2_2685_1 HRGMv2_2685_1_41 44230 44940 + LytTR
pfam HRGMv2_2685_1 HRGMv2_2685_1_42 44937 46211 + HATPase_c_5
CAZyme HRGMv2_2685_1 HRGMv2_2685_1_43 46459 49317 + GH3
CAZyme HRGMv2_2685_1 HRGMv2_2685_1_44 49434 51851 + GH3
Gene ID: HRGMv2_2685_1_23
Type: TC
Location: 22257 - 22724 (+)
Gene ID: HRGMv2_2685_1_24
Type: TC
Location: 22756 - 23565 (+)
Gene ID: HRGMv2_2685_1_25
Type: TC
Location: 23581 - 24417 (+)
Gene ID: HRGMv2_2685_1_26
Type: STP
Location: 24504 - 25487 (+)
Gene ID: HRGMv2_2685_1_27
Type: pfam
Location: 25568 - 26194 (+)
Gene ID: HRGMv2_2685_1_28
Type: TC
Location: 26196 - 27089 (+)
Gene ID: HRGMv2_2685_1_29
Type: TF
Location: 27222 - 28106 (-)
Gene ID: HRGMv2_2685_1_30
Type: pfam
Location: 28357 - 28932 (+)
Gene ID: HRGMv2_2685_1_31
Type: TC
Location: 29018 - 30052 (+)
Gene ID: HRGMv2_2685_1_32
Type: TC
Location: 30154 - 30642 (+)
Gene ID: HRGMv2_2685_1_33
Type: TC
Location: 30642 - 31961 (+)
Gene ID: HRGMv2_2685_1_34
Type: CAZyme
Location: 32081 - 34576 (+)
Gene ID: HRGMv2_2685_1_35
Type: CAZyme
Location: 34598 - 37114 (+)
Gene ID: HRGMv2_2685_1_36
Type: TC
Location: 37204 - 38580 (-)
Gene ID: HRGMv2_2685_1_37
Type: TF
Location: 38750 - 39775 (-)
Gene ID: HRGMv2_2685_1_38
Type: TC
Location: 40059 - 41741 (+)
Gene ID: HRGMv2_2685_1_39
Type: pfam
Location: 41748 - 42566 (+)
Gene ID: HRGMv2_2685_1_40
Type: CAZyme
Location: 42577 - 44085 (+)
Gene ID: HRGMv2_2685_1_41
Type: TF
Location: 44230 - 44940 (+)
Gene ID: HRGMv2_2685_1_42
Type: pfam
Location: 44937 - 46211 (+)
Gene ID: HRGMv2_2685_1_43
Type: CAZyme
Location: 46459 - 49317 (+)
Gene ID: HRGMv2_2685_1_44
Type: CAZyme
Location: 49434 - 51851 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Faecalibacterium
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2685_1_23 vegan > omnivore 2.40145 0.00821
HRGMv2_2685_1_23 vegetarian > omnivore 2.35535 0.00566
HRGMv2_2685_1_24 vegan > omnivore 2.44643 0.00821
HRGMv2_2685_1_24 vegetarian > omnivore 2.22625 0.00566
HRGMv2_2685_1_25 vegetarian > omnivore 2.03046 0.00566
HRGMv2_2685_1_25 vegan > omnivore 2.30134 0.00821
HRGMv2_2685_1_26 vegetarian > omnivore 2.23183 0.00566
HRGMv2_2685_1_26 vegan > omnivore 2.42462 0.00821
HRGMv2_2685_1_27 vegetarian > omnivore 2.35822 0.00566
HRGMv2_2685_1_27 vegan > omnivore 2.43293 0.00821
HRGMv2_2685_1_28 vegan > omnivore 2.10062 0.00821
HRGMv2_2685_1_28 vegetarian > omnivore 1.94300 0.00566

🧭 Explore Read Mapping of CGC

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