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Cluster: HRGMv2_2684_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2684_5 HRGMv2_2684_5_49 52592 53563 - 3.A.1.1.48
TC HRGMv2_2684_5 HRGMv2_2684_5_50 53578 54474 - 3.A.1.1.36
STP HRGMv2_2684_5 HRGMv2_2684_5_51 54606 55961 - SBP_bac_1
TF HRGMv2_2684_5 HRGMv2_2684_5_52 56447 57292 + HTH_6
CAZyme HRGMv2_2684_5 HRGMv2_2684_5_53 57390 58535 - GH105
CAZyme HRGMv2_2684_5 HRGMv2_2684_5_54 58539 60095 - GH28
TF HRGMv2_2684_5 HRGMv2_2684_5_55 60205 61023 + HTH_AraC | HTH_AraC
TC HRGMv2_2684_5 HRGMv2_2684_5_56 61111 61968 - 3.A.1.1.11
TC HRGMv2_2684_5 HRGMv2_2684_5_57 61979 62908 - 3.A.1.1.11
TC HRGMv2_2684_5 HRGMv2_2684_5_58 63096 64490 - 3.A.1.1.11
Gene ID: HRGMv2_2684_5_49
Type: TC
Location: 52592 - 53563 (-)
Gene ID: HRGMv2_2684_5_50
Type: TC
Location: 53578 - 54474 (-)
Gene ID: HRGMv2_2684_5_51
Type: STP
Location: 54606 - 55961 (-)
Gene ID: HRGMv2_2684_5_52
Type: TF
Location: 56447 - 57292 (+)
Gene ID: HRGMv2_2684_5_53
Type: CAZyme
Location: 57390 - 58535 (-)
Gene ID: HRGMv2_2684_5_54
Type: CAZyme
Location: 58539 - 60095 (-)
Gene ID: HRGMv2_2684_5_55
Type: TF
Location: 60205 - 61023 (+)
Gene ID: HRGMv2_2684_5_56
Type: TC
Location: 61111 - 61968 (-)
Gene ID: HRGMv2_2684_5_57
Type: TC
Location: 61979 - 62908 (-)
Gene ID: HRGMv2_2684_5_58
Type: TC
Location: 63096 - 64490 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Faecalibacterium
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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