Cluster: HRGMv2_2684_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2684
- CGC Family ID: CGCFAM_01576
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2684_1 | HRGMv2_2684_1_72 | 83294 | 84433 | - | 2.A.1.15.18 |
| TC | HRGMv2_2684_1 | HRGMv2_2684_1_73 | 84917 | 85816 | - | 3.D.6.1.3 |
| TC | HRGMv2_2684_1 | HRGMv2_2684_1_74 | 85832 | 86464 | - | 3.D.6.1.2 |
| TC | HRGMv2_2684_1 | HRGMv2_2684_1_75 | 86466 | 87131 | - | 3.D.6.1.2 |
| pfam | HRGMv2_2684_1 | HRGMv2_2684_1_76 | 87149 | 87703 | - | FMN_bind |
| TC | HRGMv2_2684_1 | HRGMv2_2684_1_77 | 87700 | 88659 | - | 3.D.6.1.2 |
| TC | HRGMv2_2684_1 | HRGMv2_2684_1_78 | 88659 | 89975 | - | 3.D.6.1.2 |
| NULL(UNKNOWN) | HRGMv2_2684_1 | HRGMv2_2684_1_79 | 90295 | 90420 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2684_1 | HRGMv2_2684_1_80 | 90547 | 91083 | - | DUF5662 |
| CAZyme | HRGMv2_2684_1 | HRGMv2_2684_1_81 | 91088 | 92965 | - | GT2 | GT2 |
| TC | HRGMv2_2684_1 | HRGMv2_2684_1_82 | 92967 | 93710 | - | 3.A.1.103.1 |
| TC | HRGMv2_2684_1 | HRGMv2_2684_1_83 | 93723 | 94514 | - | 3.A.1.103.6 |
Gene ID: HRGMv2_2684_1_72
Type: TC
Location: 83294 - 84433 (-)
Type: TC
Location: 83294 - 84433 (-)
Gene ID: HRGMv2_2684_1_73
Type: TC
Location: 84917 - 85816 (-)
Type: TC
Location: 84917 - 85816 (-)
Gene ID: HRGMv2_2684_1_74
Type: TC
Location: 85832 - 86464 (-)
Type: TC
Location: 85832 - 86464 (-)
Gene ID: HRGMv2_2684_1_75
Type: TC
Location: 86466 - 87131 (-)
Type: TC
Location: 86466 - 87131 (-)
Gene ID: HRGMv2_2684_1_76
Type: pfam
Location: 87149 - 87703 (-)
Type: pfam
Location: 87149 - 87703 (-)
Gene ID: HRGMv2_2684_1_77
Type: TC
Location: 87700 - 88659 (-)
Type: TC
Location: 87700 - 88659 (-)
Gene ID: HRGMv2_2684_1_78
Type: TC
Location: 88659 - 89975 (-)
Type: TC
Location: 88659 - 89975 (-)
Gene ID: HRGMv2_2684_1_79
Type:
Location: 90295 - 90420 (+)
Type:
Location: 90295 - 90420 (+)
Gene ID: HRGMv2_2684_1_80
Type: pfam
Location: 90547 - 91083 (-)
Type: pfam
Location: 90547 - 91083 (-)
Gene ID: HRGMv2_2684_1_81
Type: CAZyme
Location: 91088 - 92965 (-)
Type: CAZyme
Location: 91088 - 92965 (-)
Gene ID: HRGMv2_2684_1_82
Type: TC
Location: 92967 - 93710 (-)
Type: TC
Location: 92967 - 93710 (-)
Gene ID: HRGMv2_2684_1_83
Type: TC
Location: 93723 - 94514 (-)
Type: TC
Location: 93723 - 94514 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.