Cluster: HRGMv2_2684_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2684
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2684_1 | HRGMv2_2684_1_27 | 31126 | 31353 | - | 3.D.1.6.4 |
| pfam | HRGMv2_2684_1 | HRGMv2_2684_1_28 | 31800 | 33278 | - | Mur_ligase_C | Mur_ligase_M |
| pfam | HRGMv2_2684_1 | HRGMv2_2684_1_29 | 33302 | 34900 | - | POTRA_1 |
| CAZyme | HRGMv2_2684_1 | HRGMv2_2684_1_30 | 34935 | 36062 | - | GT28 |
| TC | HRGMv2_2684_1 | HRGMv2_2684_1_31 | 36114 | 37427 | - | 2.A.103.1.3 |
Gene ID: HRGMv2_2684_1_27
Type: TC
Location: 31126 - 31353 (-)
Type: TC
Location: 31126 - 31353 (-)
Gene ID: HRGMv2_2684_1_28
Type: pfam
Location: 31800 - 33278 (-)
Type: pfam
Location: 31800 - 33278 (-)
Gene ID: HRGMv2_2684_1_29
Type: pfam
Location: 33302 - 34900 (-)
Type: pfam
Location: 33302 - 34900 (-)
Gene ID: HRGMv2_2684_1_30
Type: CAZyme
Location: 34935 - 36062 (-)
Type: CAZyme
Location: 34935 - 36062 (-)
Gene ID: HRGMv2_2684_1_31
Type: TC
Location: 36114 - 37427 (-)
Type: TC
Location: 36114 - 37427 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.