Cluster: HRGMv2_2684_CGC19
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2684
- CGC Family ID: CGCFAM_00063
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2684_51 | HRGMv2_2684_51_1 | 2 | 1930 | - | GT35 |
| TF | HRGMv2_2684_51 | HRGMv2_2684_51_2 | 2059 | 2916 | + | HTH_AraC | HTH_AraC |
| TF | HRGMv2_2684_51 | HRGMv2_2684_51_3 | 2984 | 4009 | - | LacI |
| TC | HRGMv2_2684_51 | HRGMv2_2684_51_4 | 4296 | 5975 | + | 4.A.1.1.11 |
| pfam | HRGMv2_2684_51 | HRGMv2_2684_51_5 | 5983 | 6801 | + | Exo_endo_phos |
| CAZyme | HRGMv2_2684_51 | HRGMv2_2684_51_6 | 6818 | 8320 | + | GH77 |
| TC | HRGMv2_2684_51 | HRGMv2_2684_51_7 | 8442 | 9149 | - | 2.A.122.1.6 |
| TC | HRGMv2_2684_51 | HRGMv2_2684_51_8 | 9130 | 9534 | - | 1.E.14.1.1 |
Gene ID: HRGMv2_2684_51_1
Type: CAZyme
Location: 2 - 1930 (-)
Type: CAZyme
Location: 2 - 1930 (-)
Gene ID: HRGMv2_2684_51_2
Type: TF
Location: 2059 - 2916 (+)
Type: TF
Location: 2059 - 2916 (+)
Gene ID: HRGMv2_2684_51_3
Type: TF
Location: 2984 - 4009 (-)
Type: TF
Location: 2984 - 4009 (-)
Gene ID: HRGMv2_2684_51_4
Type: TC
Location: 4296 - 5975 (+)
Type: TC
Location: 4296 - 5975 (+)
Gene ID: HRGMv2_2684_51_5
Type: pfam
Location: 5983 - 6801 (+)
Type: pfam
Location: 5983 - 6801 (+)
Gene ID: HRGMv2_2684_51_6
Type: CAZyme
Location: 6818 - 8320 (+)
Type: CAZyme
Location: 6818 - 8320 (+)
Gene ID: HRGMv2_2684_51_7
Type: TC
Location: 8442 - 9149 (-)
Type: TC
Location: 8442 - 9149 (-)
Gene ID: HRGMv2_2684_51_8
Type: TC
Location: 9130 - 9534 (-)
Type: TC
Location: 9130 - 9534 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.