Cluster: HRGMv2_2684_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2684
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2684_29 | HRGMv2_2684_29_6 | 5937 | 7919 | + | GH42 |
| TF | HRGMv2_2684_29 | HRGMv2_2684_29_7 | 8062 | 9093 | + | LacI |
| pfam | HRGMv2_2684_29 | HRGMv2_2684_29_8 | 9375 | 10655 | + | SBP_bac_8 |
| TC | HRGMv2_2684_29 | HRGMv2_2684_29_9 | 10774 | 12222 | + | 3.A.1.1.27 |
| TC | HRGMv2_2684_29 | HRGMv2_2684_29_10 | 12219 | 13127 | + | 3.A.1.1.27 |
Gene ID: HRGMv2_2684_29_6
Type: CAZyme
Location: 5937 - 7919 (+)
Type: CAZyme
Location: 5937 - 7919 (+)
Gene ID: HRGMv2_2684_29_7
Type: TF
Location: 8062 - 9093 (+)
Type: TF
Location: 8062 - 9093 (+)
Gene ID: HRGMv2_2684_29_8
Type: pfam
Location: 9375 - 10655 (+)
Type: pfam
Location: 9375 - 10655 (+)
Gene ID: HRGMv2_2684_29_9
Type: TC
Location: 10774 - 12222 (+)
Type: TC
Location: 10774 - 12222 (+)
Gene ID: HRGMv2_2684_29_10
Type: TC
Location: 12219 - 13127 (+)
Type: TC
Location: 12219 - 13127 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.