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Cluster: HRGMv2_2684_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2684_16 HRGMv2_2684_16_15 17598 20213 + CBM67 | GH78
pfam HRGMv2_2684_16 HRGMv2_2684_16_16 20324 21172 - AP_endonuc_2
CAZyme HRGMv2_2684_16 HRGMv2_2684_16_17 21176 22990 - CBM32 | GH43_28
CAZyme HRGMv2_2684_16 HRGMv2_2684_16_18 22995 25202 - GH2
pfam HRGMv2_2684_16 HRGMv2_2684_16_19 25284 26774 - MFS_2
CAZyme HRGMv2_2684_16 HRGMv2_2684_16_20 27003 28304 + GH1
STP HRGMv2_2684_16 HRGMv2_2684_16_21 28359 28895 - TetR_N
sulfatase HRGMv2_2684_16 HRGMv2_2684_16_22 29090 30097 + S1_2
TC HRGMv2_2684_16 HRGMv2_2684_16_23 30173 31519 + 2.A.66.1.13
Gene ID: HRGMv2_2684_16_15
Type: CAZyme
Location: 17598 - 20213 (+)
Gene ID: HRGMv2_2684_16_16
Type: pfam
Location: 20324 - 21172 (-)
Gene ID: HRGMv2_2684_16_17
Type: CAZyme
Location: 21176 - 22990 (-)
Gene ID: HRGMv2_2684_16_18
Type: CAZyme
Location: 22995 - 25202 (-)
Gene ID: HRGMv2_2684_16_19
Type: pfam
Location: 25284 - 26774 (-)
Gene ID: HRGMv2_2684_16_20
Type: CAZyme
Location: 27003 - 28304 (+)
Gene ID: HRGMv2_2684_16_21
Type: STP
Location: 28359 - 28895 (-)
Gene ID: HRGMv2_2684_16_22
Type: sulfatase
Location: 29090 - 30097 (+)
Gene ID: HRGMv2_2684_16_23
Type: TC
Location: 30173 - 31519 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Faecalibacterium
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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