Cluster: HRGMv2_2673_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2673
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2673_1 | HRGMv2_2673_1_60 | 64478 | 65251 | - | 3.A.1.34.1 |
| TC | HRGMv2_2673_1 | HRGMv2_2673_1_61 | 65238 | 66131 | - | 3.A.1.34.1 |
| TC | HRGMv2_2673_1 | HRGMv2_2673_1_62 | 66146 | 67111 | - | 3.A.1.34.1 |
| TC | HRGMv2_2673_1 | HRGMv2_2673_1_63 | 67791 | 68708 | + | 3.A.1.5.2 |
| TC | HRGMv2_2673_1 | HRGMv2_2673_1_64 | 68724 | 69764 | + | 3.A.1.5.2 |
| TC | HRGMv2_2673_1 | HRGMv2_2673_1_65 | 69780 | 70784 | + | 3.A.1.5.2 |
| TC | HRGMv2_2673_1 | HRGMv2_2673_1_66 | 70777 | 71772 | + | 3.A.1.5.20 |
| TC | HRGMv2_2673_1 | HRGMv2_2673_1_67 | 71849 | 73528 | + | 3.A.1.5.41 |
| peptidase | HRGMv2_2673_1 | HRGMv2_2673_1_68 | 73675 | 74844 | + | M20.UPB |
| pfam | HRGMv2_2673_1 | HRGMv2_2673_1_69 | 74896 | 75264 | - | DUF4186 |
| TC | HRGMv2_2673_1 | HRGMv2_2673_1_70 | 75357 | 76673 | - | 2.A.66.1.37 |
| pfam | HRGMv2_2673_1 | HRGMv2_2673_1_71 | 76810 | 77289 | - | LMWPc |
| CAZyme | HRGMv2_2673_1 | HRGMv2_2673_1_72 | 77472 | 78983 | - | GH20 |
Gene ID: HRGMv2_2673_1_60
Type: TC
Location: 64478 - 65251 (-)
Type: TC
Location: 64478 - 65251 (-)
Gene ID: HRGMv2_2673_1_61
Type: TC
Location: 65238 - 66131 (-)
Type: TC
Location: 65238 - 66131 (-)
Gene ID: HRGMv2_2673_1_62
Type: TC
Location: 66146 - 67111 (-)
Type: TC
Location: 66146 - 67111 (-)
Gene ID: HRGMv2_2673_1_63
Type: TC
Location: 67791 - 68708 (+)
Type: TC
Location: 67791 - 68708 (+)
Gene ID: HRGMv2_2673_1_64
Type: TC
Location: 68724 - 69764 (+)
Type: TC
Location: 68724 - 69764 (+)
Gene ID: HRGMv2_2673_1_65
Type: TC
Location: 69780 - 70784 (+)
Type: TC
Location: 69780 - 70784 (+)
Gene ID: HRGMv2_2673_1_66
Type: TC
Location: 70777 - 71772 (+)
Type: TC
Location: 70777 - 71772 (+)
Gene ID: HRGMv2_2673_1_67
Type: TC
Location: 71849 - 73528 (+)
Type: TC
Location: 71849 - 73528 (+)
Gene ID: HRGMv2_2673_1_68
Type: peptidase
Location: 73675 - 74844 (+)
Type: peptidase
Location: 73675 - 74844 (+)
Gene ID: HRGMv2_2673_1_69
Type: pfam
Location: 74896 - 75264 (-)
Type: pfam
Location: 74896 - 75264 (-)
Gene ID: HRGMv2_2673_1_70
Type: TC
Location: 75357 - 76673 (-)
Type: TC
Location: 75357 - 76673 (-)
Gene ID: HRGMv2_2673_1_71
Type: pfam
Location: 76810 - 77289 (-)
Type: pfam
Location: 76810 - 77289 (-)
Gene ID: HRGMv2_2673_1_72
Type: CAZyme
Location: 77472 - 78983 (-)
Type: CAZyme
Location: 77472 - 78983 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Fimenecus
Species
Fimenecus sp000432435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2673_1_64 | vegan > omnivore | 1.08956 | 0.03558 |
| HRGMv2_2673_1_67 | vegan > omnivore | 1.08783 | 0.03558 |