Cluster: HRGMv2_2673_CGC23
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2673
- CGC Family ID: CGCFAM_02114
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2673_7 | HRGMv2_2673_7_59 | 58564 | 59988 | - | GH29 |
| TC | HRGMv2_2673_7 | HRGMv2_2673_7_60 | 60008 | 60817 | - | 3.D.6.1.3 |
| TC | HRGMv2_2673_7 | HRGMv2_2673_7_61 | 60831 | 61418 | - | 3.D.6.1.2 |
| TC | HRGMv2_2673_7 | HRGMv2_2673_7_62 | 61418 | 62131 | - | 3.D.6.1.2 |
| TC | HRGMv2_2673_7 | HRGMv2_2673_7_63 | 62124 | 62702 | - | 3.D.6.1.2 |
| TC | HRGMv2_2673_7 | HRGMv2_2673_7_64 | 62702 | 63724 | - | 3.D.6.1.2 |
| TC | HRGMv2_2673_7 | HRGMv2_2673_7_65 | 63721 | 65055 | - | 3.D.6.1.2 |
| TC | HRGMv2_2673_7 | HRGMv2_2673_7_66 | 65056 | 65586 | - | 2.A.87.3.2 |
| pfam | HRGMv2_2673_7 | HRGMv2_2673_7_67 | 65588 | 65947 | - | NusG_II |
| pfam | HRGMv2_2673_7 | HRGMv2_2673_7_68 | 65964 | 67004 | - | ApbE |
| TC | HRGMv2_2673_7 | HRGMv2_2673_7_69 | 67200 | 69119 | - | 3.A.1.135.5 |
| TC | HRGMv2_2673_7 | HRGMv2_2673_7_70 | 69119 | 70861 | - | 3.A.1.135.5 |
Gene ID: HRGMv2_2673_7_59
Type: CAZyme
Location: 58564 - 59988 (-)
Type: CAZyme
Location: 58564 - 59988 (-)
Gene ID: HRGMv2_2673_7_60
Type: TC
Location: 60008 - 60817 (-)
Type: TC
Location: 60008 - 60817 (-)
Gene ID: HRGMv2_2673_7_61
Type: TC
Location: 60831 - 61418 (-)
Type: TC
Location: 60831 - 61418 (-)
Gene ID: HRGMv2_2673_7_62
Type: TC
Location: 61418 - 62131 (-)
Type: TC
Location: 61418 - 62131 (-)
Gene ID: HRGMv2_2673_7_63
Type: TC
Location: 62124 - 62702 (-)
Type: TC
Location: 62124 - 62702 (-)
Gene ID: HRGMv2_2673_7_64
Type: TC
Location: 62702 - 63724 (-)
Type: TC
Location: 62702 - 63724 (-)
Gene ID: HRGMv2_2673_7_65
Type: TC
Location: 63721 - 65055 (-)
Type: TC
Location: 63721 - 65055 (-)
Gene ID: HRGMv2_2673_7_66
Type: TC
Location: 65056 - 65586 (-)
Type: TC
Location: 65056 - 65586 (-)
Gene ID: HRGMv2_2673_7_67
Type: pfam
Location: 65588 - 65947 (-)
Type: pfam
Location: 65588 - 65947 (-)
Gene ID: HRGMv2_2673_7_68
Type: pfam
Location: 65964 - 67004 (-)
Type: pfam
Location: 65964 - 67004 (-)
Gene ID: HRGMv2_2673_7_69
Type: TC
Location: 67200 - 69119 (-)
Type: TC
Location: 67200 - 69119 (-)
Gene ID: HRGMv2_2673_7_70
Type: TC
Location: 69119 - 70861 (-)
Type: TC
Location: 69119 - 70861 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Fimenecus
Species
Fimenecus sp000432435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2673_7_61 | vegan > omnivore | 1.52464 | 0.01616 |
| HRGMv2_2673_7_62 | vegan > omnivore | 1.16743 | 0.03558 |
| HRGMv2_2673_7_63 | vegan > omnivore | 1.04293 | 0.03558 |