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Cluster: HRGMv2_2673_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2673_3 HRGMv2_2673_3_151 167989 170400 - GH31_15
CAZyme HRGMv2_2673_3 HRGMv2_2673_3_152 170405 173119 - GH36
pfam HRGMv2_2673_3 HRGMv2_2673_3_153 173165 173617 - C_GCAxxG_C_C
pfam HRGMv2_2673_3 HRGMv2_2673_3_154 173876 174898 + Aminotran_4
TC HRGMv2_2673_3 HRGMv2_2673_3_155 175088 175714 - 3.A.2.2.1
TC HRGMv2_2673_3 HRGMv2_2673_3_156 175748 177121 - 3.A.2.3.3
TC HRGMv2_2673_3 HRGMv2_2673_3_157 177136 178890 - 3.A.2.3.1
Gene ID: HRGMv2_2673_3_151
Type: CAZyme
Location: 167989 - 170400 (-)
Gene ID: HRGMv2_2673_3_152
Type: CAZyme
Location: 170405 - 173119 (-)
Gene ID: HRGMv2_2673_3_153
Type: pfam
Location: 173165 - 173617 (-)
Gene ID: HRGMv2_2673_3_154
Type: pfam
Location: 173876 - 174898 (+)
Gene ID: HRGMv2_2673_3_155
Type: TC
Location: 175088 - 175714 (-)
Gene ID: HRGMv2_2673_3_156
Type: TC
Location: 175748 - 177121 (-)
Gene ID: HRGMv2_2673_3_157
Type: TC
Location: 177136 - 178890 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2673_3_156 vegan > omnivore 1.73764 0.03558

🧭 Explore Read Mapping of CGC

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