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Cluster: HRGMv2_2673_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2673_3 HRGMv2_2673_3_117 129989 131323 + 1.A.26.1.2
pfam HRGMv2_2673_3 HRGMv2_2673_3_118 131383 132891 - FGGY_N | FGGY_C
CAZyme HRGMv2_2673_3 HRGMv2_2673_3_119 132943 134508 - GH20
pfam HRGMv2_2673_3 HRGMv2_2673_3_120 134867 136357 + GalP_UDP_transf | GalP_UDP_tr_C
TC HRGMv2_2673_3 HRGMv2_2673_3_121 136787 137662 + 3.A.1.24.5
TC HRGMv2_2673_3 HRGMv2_2673_3_122 137686 138690 + 3.A.1.24.2
TC HRGMv2_2673_3 HRGMv2_2673_3_123 138683 139387 + 3.A.1.24.5
Gene ID: HRGMv2_2673_3_117
Type: TC
Location: 129989 - 131323 (+)
Gene ID: HRGMv2_2673_3_118
Type: pfam
Location: 131383 - 132891 (-)
Gene ID: HRGMv2_2673_3_119
Type: CAZyme
Location: 132943 - 134508 (-)
Gene ID: HRGMv2_2673_3_120
Type: pfam
Location: 134867 - 136357 (+)
Gene ID: HRGMv2_2673_3_121
Type: TC
Location: 136787 - 137662 (+)
Gene ID: HRGMv2_2673_3_122
Type: TC
Location: 137686 - 138690 (+)
Gene ID: HRGMv2_2673_3_123
Type: TC
Location: 138683 - 139387 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2673_3_122 vegan > omnivore 1.48807 0.03558
HRGMv2_2673_3_123 vegetarian > vegan 2.43923 0.00701

🧭 Explore Read Mapping of CGC

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