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Cluster: HRGMv2_2667_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2667_2 HRGMv2_2667_2_19 18982 20889 + GH127
STP HRGMv2_2667_2 HRGMv2_2667_2_20 20950 22839 - HATPase_c
pfam HRGMv2_2667_2 HRGMv2_2667_2_21 23009 24478 - Fucose_iso_C
TC HRGMv2_2667_2 HRGMv2_2667_2_22 24780 25670 + 3.A.1.3.17
TC HRGMv2_2667_2 HRGMv2_2667_2_23 25768 26478 + 3.A.1.3.15
TC HRGMv2_2667_2 HRGMv2_2667_2_24 26462 27184 + 3.A.1.3.25
Gene ID: HRGMv2_2667_2_19
Type: CAZyme
Location: 18982 - 20889 (+)
Gene ID: HRGMv2_2667_2_20
Type: STP
Location: 20950 - 22839 (-)
Gene ID: HRGMv2_2667_2_21
Type: pfam
Location: 23009 - 24478 (-)
Gene ID: HRGMv2_2667_2_22
Type: TC
Location: 24780 - 25670 (+)
Gene ID: HRGMv2_2667_2_23
Type: TC
Location: 25768 - 26478 (+)
Gene ID: HRGMv2_2667_2_24
Type: TC
Location: 26462 - 27184 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Acutalibacteraceae
→
Genus
CAG-217
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2667_2_24 vegetarian > vegan 1.30611 0.00110

🧭 Explore Read Mapping of CGC

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