Cluster: HRGMv2_2666_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2666
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2666_3 | HRGMv2_2666_3_42 | 51807 | 53138 | - | CE4 |
| TC | HRGMv2_2666_3 | HRGMv2_2666_3_43 | 53395 | 55317 | + | 3.D.1.4.2 |
| TC | HRGMv2_2666_3 | HRGMv2_2666_3_44 | 55314 | 56198 | + | 3.D.1.4.2 |
| TC | HRGMv2_2666_3 | HRGMv2_2666_3_45 | 56201 | 56638 | + | 3.D.1.4.2 |
| pfam | HRGMv2_2666_3 | HRGMv2_2666_3_46 | 56635 | 57036 | + | Complex1_30kDa |
| TC | HRGMv2_2666_3 | HRGMv2_2666_3_47 | 57029 | 58108 | + | 3.D.1.4.2 |
Gene ID: HRGMv2_2666_3_42
Type: CAZyme
Location: 51807 - 53138 (-)
Type: CAZyme
Location: 51807 - 53138 (-)
Gene ID: HRGMv2_2666_3_43
Type: TC
Location: 53395 - 55317 (+)
Type: TC
Location: 53395 - 55317 (+)
Gene ID: HRGMv2_2666_3_44
Type: TC
Location: 55314 - 56198 (+)
Type: TC
Location: 55314 - 56198 (+)
Gene ID: HRGMv2_2666_3_45
Type: TC
Location: 56201 - 56638 (+)
Type: TC
Location: 56201 - 56638 (+)
Gene ID: HRGMv2_2666_3_46
Type: pfam
Location: 56635 - 57036 (+)
Type: pfam
Location: 56635 - 57036 (+)
Gene ID: HRGMv2_2666_3_47
Type: TC
Location: 57029 - 58108 (+)
Type: TC
Location: 57029 - 58108 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
CAG-217
Species
CAG-217 sp000436335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2666_3_42 | vegan > vegetarian | 6.12946 | 0.04996 |
| HRGMv2_2666_3_43 | vegan > vegetarian | 17.79353 | 0.04863 |
| HRGMv2_2666_3_44 | vegan > vegetarian | 17.78942 | 0.04863 |
| HRGMv2_2666_3_46 | vegan > vegetarian | 18.10270 | 0.04863 |