Cluster: HRGMv2_2666_CGC17
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2666
- CGC Family ID: CGCFAM_05155
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2666_21 | HRGMv2_2666_21_7 | 5533 | 6546 | - | GH177 |
| pfam | HRGMv2_2666_21 | HRGMv2_2666_21_8 | 6844 | 7089 | + | TSCPD |
| CAZyme | HRGMv2_2666_21 | HRGMv2_2666_21_9 | 7113 | 9467 | + | GH36 |
| peptidase | HRGMv2_2666_21 | HRGMv2_2666_21_10 | 9470 | 10027 | + | S26.UPA |
| peptidase | HRGMv2_2666_21 | HRGMv2_2666_21_11 | 10043 | 10828 | + | S26.UPA |
| TC | HRGMv2_2666_21 | HRGMv2_2666_21_12 | 10932 | 11354 | - | 3.A.2.1.5 |
| TC | HRGMv2_2666_21 | HRGMv2_2666_21_13 | 11379 | 12767 | - | 3.A.2.1.5 |
| TC | HRGMv2_2666_21 | HRGMv2_2666_21_14 | 12785 | 13681 | - | 3.A.2.1.5 |
| TC | HRGMv2_2666_21 | HRGMv2_2666_21_15 | 13674 | 15185 | - | 3.A.2.1.5 |
| pfam | HRGMv2_2666_21 | HRGMv2_2666_21_16 | 15185 | 15694 | - | OSCP |
| TC | HRGMv2_2666_21 | HRGMv2_2666_21_17 | 15691 | 16182 | - | 3.A.2.1.5 |
| pfam | HRGMv2_2666_21 | HRGMv2_2666_21_18 | 16219 | 16437 | - | ATP-synt_C |
| TC | HRGMv2_2666_21 | HRGMv2_2666_21_19 | 16470 | 17168 | - | 3.A.2.1.5 |
Gene ID: HRGMv2_2666_21_7
Type: CAZyme
Location: 5533 - 6546 (-)
Type: CAZyme
Location: 5533 - 6546 (-)
Gene ID: HRGMv2_2666_21_8
Type: pfam
Location: 6844 - 7089 (+)
Type: pfam
Location: 6844 - 7089 (+)
Gene ID: HRGMv2_2666_21_9
Type: CAZyme
Location: 7113 - 9467 (+)
Type: CAZyme
Location: 7113 - 9467 (+)
Gene ID: HRGMv2_2666_21_10
Type: peptidase
Location: 9470 - 10027 (+)
Type: peptidase
Location: 9470 - 10027 (+)
Gene ID: HRGMv2_2666_21_11
Type: peptidase
Location: 10043 - 10828 (+)
Type: peptidase
Location: 10043 - 10828 (+)
Gene ID: HRGMv2_2666_21_12
Type: TC
Location: 10932 - 11354 (-)
Type: TC
Location: 10932 - 11354 (-)
Gene ID: HRGMv2_2666_21_13
Type: TC
Location: 11379 - 12767 (-)
Type: TC
Location: 11379 - 12767 (-)
Gene ID: HRGMv2_2666_21_14
Type: TC
Location: 12785 - 13681 (-)
Type: TC
Location: 12785 - 13681 (-)
Gene ID: HRGMv2_2666_21_15
Type: TC
Location: 13674 - 15185 (-)
Type: TC
Location: 13674 - 15185 (-)
Gene ID: HRGMv2_2666_21_16
Type: pfam
Location: 15185 - 15694 (-)
Type: pfam
Location: 15185 - 15694 (-)
Gene ID: HRGMv2_2666_21_17
Type: TC
Location: 15691 - 16182 (-)
Type: TC
Location: 15691 - 16182 (-)
Gene ID: HRGMv2_2666_21_18
Type: pfam
Location: 16219 - 16437 (-)
Type: pfam
Location: 16219 - 16437 (-)
Gene ID: HRGMv2_2666_21_19
Type: TC
Location: 16470 - 17168 (-)
Type: TC
Location: 16470 - 17168 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
CAG-217
Species
CAG-217 sp000436335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2666_21_8 | vegan > vegetarian | 18.39215 | 0.04863 |
| HRGMv2_2666_21_11 | vegan > vegetarian | 17.87604 | 0.04863 |
| HRGMv2_2666_21_16 | vegan > vegetarian | 18.24889 | 0.04863 |
| HRGMv2_2666_21_17 | vegan > vegetarian | 18.11927 | 0.04863 |
| HRGMv2_2666_21_18 | vegan > vegetarian | 18.38758 | 0.04863 |
| HRGMv2_2666_21_19 | vegan > vegetarian | 17.96434 | 0.04863 |