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Cluster: HRGMv2_2666_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2666_9 HRGMv2_2666_9_3 1355 2488 - 3.B.1.1.5
STP HRGMv2_2666_9 HRGMv2_2666_9_4 2791 3153 + Sigma70_r4
TC HRGMv2_2666_9 HRGMv2_2666_9_5 3177 4574 + 3.A.5.1.1
pfam HRGMv2_2666_9 HRGMv2_2666_9_6 4645 4887 + Ribosomal_S16
pfam HRGMv2_2666_9 HRGMv2_2666_9_7 4932 5165 + KH_KhpA-B
CAZyme HRGMv2_2666_9 HRGMv2_2666_9_8 5471 8008 + GH2
pfam HRGMv2_2666_9 HRGMv2_2666_9_9 8173 8682 + RimM
pfam HRGMv2_2666_9 HRGMv2_2666_9_10 8672 9415 + tRNA_m1G_MT
TC HRGMv2_2666_9 HRGMv2_2666_9_11 9590 9853 + 8.A.8.1.4
Gene ID: HRGMv2_2666_9_3
Type: TC
Location: 1355 - 2488 (-)
Gene ID: HRGMv2_2666_9_4
Type: STP
Location: 2791 - 3153 (+)
Gene ID: HRGMv2_2666_9_5
Type: TC
Location: 3177 - 4574 (+)
Gene ID: HRGMv2_2666_9_6
Type: pfam
Location: 4645 - 4887 (+)
Gene ID: HRGMv2_2666_9_7
Type: pfam
Location: 4932 - 5165 (+)
Gene ID: HRGMv2_2666_9_8
Type: CAZyme
Location: 5471 - 8008 (+)
Gene ID: HRGMv2_2666_9_9
Type: pfam
Location: 8173 - 8682 (+)
Gene ID: HRGMv2_2666_9_10
Type: pfam
Location: 8672 - 9415 (+)
Gene ID: HRGMv2_2666_9_11
Type: TC
Location: 9590 - 9853 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2666_9_8 vegan > vegetarian 6.22144 0.04996
HRGMv2_2666_9_9 vegan > vegetarian 18.11037 0.04863
HRGMv2_2666_9_10 vegan > vegetarian 3.30960 0.04863

🧭 Explore Read Mapping of CGC

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