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Cluster: HRGMv2_2666_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2666_1 HRGMv2_2666_1_54 70590 72953 + GH31_15
TC HRGMv2_2666_1 HRGMv2_2666_1_55 73007 74380 + 2.A.22.5.3
TC HRGMv2_2666_1 HRGMv2_2666_1_56 74549 75994 + 2.A.2.1.1
CAZyme HRGMv2_2666_1 HRGMv2_2666_1_57 76086 78761 - GH95
NULL(UNKNOWN) HRGMv2_2666_1 HRGMv2_2666_1_58 78911 79162 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2666_1 HRGMv2_2666_1_59 79159 80640 - Metallophos
CAZyme HRGMv2_2666_1 HRGMv2_2666_1_60 80708 82183 - GH29
Gene ID: HRGMv2_2666_1_54
Type: CAZyme
Location: 70590 - 72953 (+)
Gene ID: HRGMv2_2666_1_55
Type: TC
Location: 73007 - 74380 (+)
Gene ID: HRGMv2_2666_1_56
Type: TC
Location: 74549 - 75994 (+)
Gene ID: HRGMv2_2666_1_57
Type: CAZyme
Location: 76086 - 78761 (-)
Gene ID: HRGMv2_2666_1_58
Type:
Location: 78911 - 79162 (-)
Gene ID: HRGMv2_2666_1_59
Type: pfam
Location: 79159 - 80640 (-)
Gene ID: HRGMv2_2666_1_60
Type: CAZyme
Location: 80708 - 82183 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2666_1_57 vegan > vegetarian 17.80410 0.04768
HRGMv2_2666_1_58 vegan > vegetarian 17.44921 0.04863

🧭 Explore Read Mapping of CGC

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