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Cluster: HRGMv2_2656_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2656_3 HRGMv2_2656_3_1 2 5536 - 1.C.75.1.3
TC HRGMv2_2656_3 HRGMv2_2656_3_2 5539 7209 - 1.B.20.1.3
STP HRGMv2_2656_3 HRGMv2_2656_3_3 8778 9776 - HD
TC HRGMv2_2656_3 HRGMv2_2656_3_4 9778 11157 - 1.A.26.1.2
pfam HRGMv2_2656_3 HRGMv2_2656_3_5 11352 12380 + LysM | LysM | LysM
TC HRGMv2_2656_3 HRGMv2_2656_3_6 12396 13505 + 2.A.103.1.3
CAZyme HRGMv2_2656_3 HRGMv2_2656_3_7 13502 14644 + GT28
Gene ID: HRGMv2_2656_3_1
Type: TC
Location: 2 - 5536 (-)
Gene ID: HRGMv2_2656_3_2
Type: TC
Location: 5539 - 7209 (-)
Gene ID: HRGMv2_2656_3_3
Type: STP
Location: 8778 - 9776 (-)
Gene ID: HRGMv2_2656_3_4
Type: TC
Location: 9778 - 11157 (-)
Gene ID: HRGMv2_2656_3_5
Type: pfam
Location: 11352 - 12380 (+)
Gene ID: HRGMv2_2656_3_6
Type: TC
Location: 12396 - 13505 (+)
Gene ID: HRGMv2_2656_3_7
Type: CAZyme
Location: 13502 - 14644 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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