Cluster: HRGMv2_2650_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2650
- CGC Family ID: CGCFAM_04062
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2650_9 | HRGMv2_2650_9_40 | 51185 | 53776 | + | 2.A.6.4.3 |
| CAZyme | HRGMv2_2650_9 | HRGMv2_2650_9_41 | 54061 | 57078 | - | GH123 |
| peptidase | HRGMv2_2650_9 | HRGMv2_2650_9_42 | 57204 | 58592 | + | S01.UPC |
| NULL(UNKNOWN) | HRGMv2_2650_9 | HRGMv2_2650_9_43 | 58595 | 59170 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2650_9 | HRGMv2_2650_9_44 | 59167 | 60429 | + | 1.A.30.3.4 |
| pfam | HRGMv2_2650_9 | HRGMv2_2650_9_45 | 60430 | 60966 | + | MotA_ExbB |
| TC | HRGMv2_2650_9 | HRGMv2_2650_9_46 | 60963 | 61370 | + | 1.A.30.2.6 |
Gene ID: HRGMv2_2650_9_40
Type: TC
Location: 51185 - 53776 (+)
Type: TC
Location: 51185 - 53776 (+)
Gene ID: HRGMv2_2650_9_41
Type: CAZyme
Location: 54061 - 57078 (-)
Type: CAZyme
Location: 54061 - 57078 (-)
Gene ID: HRGMv2_2650_9_42
Type: peptidase
Location: 57204 - 58592 (+)
Type: peptidase
Location: 57204 - 58592 (+)
Gene ID: HRGMv2_2650_9_43
Type:
Location: 58595 - 59170 (+)
Type:
Location: 58595 - 59170 (+)
Gene ID: HRGMv2_2650_9_44
Type: TC
Location: 59167 - 60429 (+)
Type: TC
Location: 59167 - 60429 (+)
Gene ID: HRGMv2_2650_9_45
Type: pfam
Location: 60430 - 60966 (+)
Type: pfam
Location: 60430 - 60966 (+)
Gene ID: HRGMv2_2650_9_46
Type: TC
Location: 60963 - 61370 (+)
Type: TC
Location: 60963 - 61370 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Opitutales
Family
CAG-312
Genus
Merdousia
Species
Merdousia sp905214995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.