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Cluster: HRGMv2_2650_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2650_7 HRGMv2_2650_7_46 58085 59374 - GH171
STP HRGMv2_2650_7 HRGMv2_2650_7_47 59752 60498 + Sigma70_r2 | Sigma70_r3 | Sigma70_r4
NULL(UNKNOWN) HRGMv2_2650_7 HRGMv2_2650_7_48 60372 60917 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2650_7 HRGMv2_2650_7_49 61385 61894 + 3.D.1.5.1
TC HRGMv2_2650_7 HRGMv2_2650_7_50 61901 62509 + 3.D.1.5.1
TC HRGMv2_2650_7 HRGMv2_2650_7_51 62520 63737 + 3.D.1.5.1
TC HRGMv2_2650_7 HRGMv2_2650_7_52 63747 64298 + 3.D.1.6.1
TC HRGMv2_2650_7 HRGMv2_2650_7_53 64303 65667 + 3.D.1.3.1
TC HRGMv2_2650_7 HRGMv2_2650_7_54 65669 67330 + 3.D.1.6.4
TC HRGMv2_2650_7 HRGMv2_2650_7_55 67343 68473 + 3.D.1.5.1
TC HRGMv2_2650_7 HRGMv2_2650_7_56 68485 69021 + 3.D.1.6.3
pfam HRGMv2_2650_7 HRGMv2_2650_7_57 69021 69548 + Oxidored_q3
pfam HRGMv2_2650_7 HRGMv2_2650_7_58 69553 69855 + Oxidored_q2
TC HRGMv2_2650_7 HRGMv2_2650_7_59 69860 71764 + 3.D.1.5.1
TC HRGMv2_2650_7 HRGMv2_2650_7_60 71777 73273 + 3.D.1.5.1
TC HRGMv2_2650_7 HRGMv2_2650_7_61 73280 74707 + 3.D.1.3.1
Gene ID: HRGMv2_2650_7_46
Type: CAZyme
Location: 58085 - 59374 (-)
Gene ID: HRGMv2_2650_7_47
Type: STP
Location: 59752 - 60498 (+)
Gene ID: HRGMv2_2650_7_48
Type:
Location: 60372 - 60917 (-)
Gene ID: HRGMv2_2650_7_49
Type: TC
Location: 61385 - 61894 (+)
Gene ID: HRGMv2_2650_7_50
Type: TC
Location: 61901 - 62509 (+)
Gene ID: HRGMv2_2650_7_51
Type: TC
Location: 62520 - 63737 (+)
Gene ID: HRGMv2_2650_7_52
Type: TC
Location: 63747 - 64298 (+)
Gene ID: HRGMv2_2650_7_53
Type: TC
Location: 64303 - 65667 (+)
Gene ID: HRGMv2_2650_7_54
Type: TC
Location: 65669 - 67330 (+)
Gene ID: HRGMv2_2650_7_55
Type: TC
Location: 67343 - 68473 (+)
Gene ID: HRGMv2_2650_7_56
Type: TC
Location: 68485 - 69021 (+)
Gene ID: HRGMv2_2650_7_57
Type: pfam
Location: 69021 - 69548 (+)
Gene ID: HRGMv2_2650_7_58
Type: pfam
Location: 69553 - 69855 (+)
Gene ID: HRGMv2_2650_7_59
Type: TC
Location: 69860 - 71764 (+)
Gene ID: HRGMv2_2650_7_60
Type: TC
Location: 71777 - 73273 (+)
Gene ID: HRGMv2_2650_7_61
Type: TC
Location: 73280 - 74707 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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