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Cluster: HRGMv2_2650_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2650_1 HRGMv2_2650_1_15 17761 19494 + GH20
TC HRGMv2_2650_1 HRGMv2_2650_1_16 19503 20162 + 2.A.76.1.7
pfam HRGMv2_2650_1 HRGMv2_2650_1_17 20289 22127 + tRNA-synt_2b | HGTP_anticodon | tRNA_SAD
TC HRGMv2_2650_1 HRGMv2_2650_1_18 22396 22677 - 8.A.8.1.5
TC HRGMv2_2650_1 HRGMv2_2650_1_19 22869 24140 - 1.B.9.1.1
TC HRGMv2_2650_1 HRGMv2_2650_1_20 24328 24585 + 3.D.1.6.3
pfam HRGMv2_2650_1 HRGMv2_2650_1_21 24870 26111 + ketoacyl-synt | Ketoacyl-synt_C
CAZyme HRGMv2_2650_1 HRGMv2_2650_1_22 26522 28543 - PL37
Gene ID: HRGMv2_2650_1_15
Type: CAZyme
Location: 17761 - 19494 (+)
Gene ID: HRGMv2_2650_1_16
Type: TC
Location: 19503 - 20162 (+)
Gene ID: HRGMv2_2650_1_17
Type: pfam
Location: 20289 - 22127 (+)
Gene ID: HRGMv2_2650_1_18
Type: TC
Location: 22396 - 22677 (-)
Gene ID: HRGMv2_2650_1_19
Type: TC
Location: 22869 - 24140 (-)
Gene ID: HRGMv2_2650_1_20
Type: TC
Location: 24328 - 24585 (+)
Gene ID: HRGMv2_2650_1_21
Type: pfam
Location: 24870 - 26111 (+)
Gene ID: HRGMv2_2650_1_22
Type: CAZyme
Location: 26522 - 28543 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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