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Cluster: HRGMv2_2636_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2636_2 HRGMv2_2636_2_8 7697 8770 + 3.D.4.4.2
TC HRGMv2_2636_2 HRGMv2_2636_2_9 8790 9221 + 3.D.4.4.2
TC HRGMv2_2636_2 HRGMv2_2636_2_10 9833 10378 + 3.D.4.4.2
pfam HRGMv2_2636_2 HRGMv2_2636_2_11 10435 11319 + Cytochrom_C | Cytochrom_C | Cytochrome_CBB3 | Cytochrome_CBB3
pfam HRGMv2_2636_2 HRGMv2_2636_2_12 11316 12536 + Rieske | QcrA_N
TC HRGMv2_2636_2 HRGMv2_2636_2_13 12536 14158 + 3.D.3.4.1
peptidase HRGMv2_2636_2 HRGMv2_2636_2_14 15127 15756 + C40.UNW
peptidase HRGMv2_2636_2 HRGMv2_2636_2_15 15870 16913 + C40.007
CAZyme HRGMv2_2636_2 HRGMv2_2636_2_16 16914 18017 + GT4
Gene ID: HRGMv2_2636_2_8
Type: TC
Location: 7697 - 8770 (+)
Gene ID: HRGMv2_2636_2_9
Type: TC
Location: 8790 - 9221 (+)
Gene ID: HRGMv2_2636_2_10
Type: TC
Location: 9833 - 10378 (+)
Gene ID: HRGMv2_2636_2_11
Type: pfam
Location: 10435 - 11319 (+)
Gene ID: HRGMv2_2636_2_12
Type: pfam
Location: 11316 - 12536 (+)
Gene ID: HRGMv2_2636_2_13
Type: TC
Location: 12536 - 14158 (+)
Gene ID: HRGMv2_2636_2_14
Type: peptidase
Location: 15127 - 15756 (+)
Gene ID: HRGMv2_2636_2_15
Type: peptidase
Location: 15870 - 16913 (+)
Gene ID: HRGMv2_2636_2_16
Type: CAZyme
Location: 16914 - 18017 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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