Cluster: HRGMv2_2635_CGC9
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2635
- CGC Family ID: CGCFAM_00812
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2635_4 | HRGMv2_2635_4_80 | 96593 | 98149 | - | 3.B.1.1.5 |
| pfam | HRGMv2_2635_4 | HRGMv2_2635_4_81 | 98124 | 102830 | - | ketoacyl-synt | PP-binding | PP-binding | Acyl_transf_1 | Thioesterase | Ketoacyl-synt_C | Abhydrolase_6 | KAsynt_C_assoc | ACP_SdgA_C |
| sulfatase | HRGMv2_2635_4 | HRGMv2_2635_4_82 | 102910 | 104622 | - | S1_4 |
| CAZyme | HRGMv2_2635_4 | HRGMv2_2635_4_83 | 104682 | 105596 | - | CE5 |
| NULL(UNKNOWN) | HRGMv2_2635_4 | HRGMv2_2635_4_84 | 105619 | 106050 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2635_4 | HRGMv2_2635_4_85 | 106053 | 107999 | - | CE1 |
| pfam | HRGMv2_2635_4 | HRGMv2_2635_4_86 | 108137 | 109537 | - | Aldedh |
| NULL(UNKNOWN) | HRGMv2_2635_4 | HRGMv2_2635_4_87 | 109559 | 110704 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2635_4 | HRGMv2_2635_4_88 | 110864 | 111877 | - | CE1 |
| CAZyme | HRGMv2_2635_4 | HRGMv2_2635_4_89 | 112015 | 113733 | - | GT89 |
| pfam | HRGMv2_2635_4 | HRGMv2_2635_4_90 | 113763 | 114743 | - | UbiA |
| pfam | HRGMv2_2635_4 | HRGMv2_2635_4_91 | 114736 | 115251 | - | PAP2 | PAP2_3 |
| CAZyme | HRGMv2_2635_4 | HRGMv2_2635_4_92 | 115241 | 117193 | - | GT2 |
Gene ID: HRGMv2_2635_4_80
Type: TC
Location: 96593 - 98149 (-)
Type: TC
Location: 96593 - 98149 (-)
Gene ID: HRGMv2_2635_4_81
Type: pfam
Location: 98124 - 102830 (-)
Type: pfam
Location: 98124 - 102830 (-)
Gene ID: HRGMv2_2635_4_82
Type: sulfatase
Location: 102910 - 104622 (-)
Type: sulfatase
Location: 102910 - 104622 (-)
Gene ID: HRGMv2_2635_4_83
Type: CAZyme
Location: 104682 - 105596 (-)
Type: CAZyme
Location: 104682 - 105596 (-)
Gene ID: HRGMv2_2635_4_84
Type:
Location: 105619 - 106050 (-)
Type:
Location: 105619 - 106050 (-)
Gene ID: HRGMv2_2635_4_85
Type: CAZyme
Location: 106053 - 107999 (-)
Type: CAZyme
Location: 106053 - 107999 (-)
Gene ID: HRGMv2_2635_4_86
Type: pfam
Location: 108137 - 109537 (-)
Type: pfam
Location: 108137 - 109537 (-)
Gene ID: HRGMv2_2635_4_87
Type:
Location: 109559 - 110704 (-)
Type:
Location: 109559 - 110704 (-)
Gene ID: HRGMv2_2635_4_88
Type: CAZyme
Location: 110864 - 111877 (-)
Type: CAZyme
Location: 110864 - 111877 (-)
Gene ID: HRGMv2_2635_4_89
Type: CAZyme
Location: 112015 - 113733 (-)
Type: CAZyme
Location: 112015 - 113733 (-)
Gene ID: HRGMv2_2635_4_90
Type: pfam
Location: 113763 - 114743 (-)
Type: pfam
Location: 113763 - 114743 (-)
Gene ID: HRGMv2_2635_4_91
Type: pfam
Location: 114736 - 115251 (-)
Type: pfam
Location: 114736 - 115251 (-)
Gene ID: HRGMv2_2635_4_92
Type: CAZyme
Location: 115241 - 117193 (-)
Type: CAZyme
Location: 115241 - 117193 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Corynebacterium
Species
Corynebacterium marquesiae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.