Cluster: HRGMv2_2635_CGC22
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2635
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2635_15 | HRGMv2_2635_15_2 | 1775 | 2503 | + | 3.A.1.125.3 |
| TC | HRGMv2_2635_15 | HRGMv2_2635_15_3 | 2504 | 5047 | + | 3.A.1.125.3 |
| pfam | HRGMv2_2635_15 | HRGMv2_2635_15_4 | 5102 | 7429 | - | LPG_synthase_C |
| CAZyme | HRGMv2_2635_15 | HRGMv2_2635_15_5 | 7398 | 8600 | - | CE1 |
| pfam | HRGMv2_2635_15 | HRGMv2_2635_15_6 | 8662 | 9021 | - | CRCB |
| pfam | HRGMv2_2635_15 | HRGMv2_2635_15_7 | 9018 | 9320 | - | CRCB |
| TC | HRGMv2_2635_15 | HRGMv2_2635_15_8 | 9331 | 10752 | - | 2.A.25.1.3 |
Gene ID: HRGMv2_2635_15_2
Type: TC
Location: 1775 - 2503 (+)
Type: TC
Location: 1775 - 2503 (+)
Gene ID: HRGMv2_2635_15_3
Type: TC
Location: 2504 - 5047 (+)
Type: TC
Location: 2504 - 5047 (+)
Gene ID: HRGMv2_2635_15_4
Type: pfam
Location: 5102 - 7429 (-)
Type: pfam
Location: 5102 - 7429 (-)
Gene ID: HRGMv2_2635_15_5
Type: CAZyme
Location: 7398 - 8600 (-)
Type: CAZyme
Location: 7398 - 8600 (-)
Gene ID: HRGMv2_2635_15_6
Type: pfam
Location: 8662 - 9021 (-)
Type: pfam
Location: 8662 - 9021 (-)
Gene ID: HRGMv2_2635_15_7
Type: pfam
Location: 9018 - 9320 (-)
Type: pfam
Location: 9018 - 9320 (-)
Gene ID: HRGMv2_2635_15_8
Type: TC
Location: 9331 - 10752 (-)
Type: TC
Location: 9331 - 10752 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Corynebacterium
Species
Corynebacterium marquesiae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.