Cluster: HRGMv2_2633_CGC3
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2633
- CGC Family ID: CGCFAM_02900
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2633_1 | HRGMv2_2633_1_246 | 258834 | 260027 | + | 4.D.2.4.1 |
| pfam | HRGMv2_2633_1 | HRGMv2_2633_1_247 | 260135 | 260626 | + | DUF3054 |
| TC | HRGMv2_2633_1 | HRGMv2_2633_1_248 | 260687 | 261670 | + | 2.A.17.1.7 |
| TC | HRGMv2_2633_1 | HRGMv2_2633_1_249 | 261634 | 262188 | + | 2.A.17.1.7 |
| pfam | HRGMv2_2633_1 | HRGMv2_2633_1_250 | 262305 | 263756 | - | DUF963 |
| NULL(UNKNOWN) | HRGMv2_2633_1 | HRGMv2_2633_1_251 | 263937 | 264263 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2633_1 | HRGMv2_2633_1_252 | 264368 | 265315 | - | CE5 |
| NULL(UNKNOWN) | HRGMv2_2633_1 | HRGMv2_2633_1_253 | 265340 | 266002 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2633_1 | HRGMv2_2633_1_254 | 266124 | 268160 | - | CE1 |
| CAZyme | HRGMv2_2633_1 | HRGMv2_2633_1_255 | 268535 | 269725 | - | CE1 |
| pfam | HRGMv2_2633_1 | HRGMv2_2633_1_256 | 270107 | 271144 | - | UbiA |
| pfam | HRGMv2_2633_1 | HRGMv2_2633_1_257 | 271227 | 271751 | - | PAP2 | PAP2_3 |
| CAZyme | HRGMv2_2633_1 | HRGMv2_2633_1_258 | 271741 | 273828 | - | GT2 |
| peptidase | HRGMv2_2633_1 | HRGMv2_2633_1_259 | 274182 | 275153 | - | S09.UPW |
| NULL(UNKNOWN) | HRGMv2_2633_1 | HRGMv2_2633_1_260 | 275153 | 275287 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2633_1 | HRGMv2_2633_1_261 | 275572 | 277875 | + | 4.A.1.1.6 |
| sulfatase | HRGMv2_2633_1 | HRGMv2_2633_1_262 | 277859 | 279403 | - | S1_6 |
| TC | HRGMv2_2633_1 | HRGMv2_2633_1_263 | 279434 | 281791 | - | 2.A.15.1.4 |
| CAZyme | HRGMv2_2633_1 | HRGMv2_2633_1_264 | 282127 | 283899 | + | AA3_2 |
Gene ID: HRGMv2_2633_1_246
Type: TC
Location: 258834 - 260027 (+)
Type: TC
Location: 258834 - 260027 (+)
Gene ID: HRGMv2_2633_1_247
Type: pfam
Location: 260135 - 260626 (+)
Type: pfam
Location: 260135 - 260626 (+)
Gene ID: HRGMv2_2633_1_248
Type: TC
Location: 260687 - 261670 (+)
Type: TC
Location: 260687 - 261670 (+)
Gene ID: HRGMv2_2633_1_249
Type: TC
Location: 261634 - 262188 (+)
Type: TC
Location: 261634 - 262188 (+)
Gene ID: HRGMv2_2633_1_250
Type: pfam
Location: 262305 - 263756 (-)
Type: pfam
Location: 262305 - 263756 (-)
Gene ID: HRGMv2_2633_1_251
Type:
Location: 263937 - 264263 (+)
Type:
Location: 263937 - 264263 (+)
Gene ID: HRGMv2_2633_1_252
Type: CAZyme
Location: 264368 - 265315 (-)
Type: CAZyme
Location: 264368 - 265315 (-)
Gene ID: HRGMv2_2633_1_253
Type:
Location: 265340 - 266002 (-)
Type:
Location: 265340 - 266002 (-)
Gene ID: HRGMv2_2633_1_254
Type: CAZyme
Location: 266124 - 268160 (-)
Type: CAZyme
Location: 266124 - 268160 (-)
Gene ID: HRGMv2_2633_1_255
Type: CAZyme
Location: 268535 - 269725 (-)
Type: CAZyme
Location: 268535 - 269725 (-)
Gene ID: HRGMv2_2633_1_256
Type: pfam
Location: 270107 - 271144 (-)
Type: pfam
Location: 270107 - 271144 (-)
Gene ID: HRGMv2_2633_1_257
Type: pfam
Location: 271227 - 271751 (-)
Type: pfam
Location: 271227 - 271751 (-)
Gene ID: HRGMv2_2633_1_258
Type: CAZyme
Location: 271741 - 273828 (-)
Type: CAZyme
Location: 271741 - 273828 (-)
Gene ID: HRGMv2_2633_1_259
Type: peptidase
Location: 274182 - 275153 (-)
Type: peptidase
Location: 274182 - 275153 (-)
Gene ID: HRGMv2_2633_1_260
Type:
Location: 275153 - 275287 (-)
Type:
Location: 275153 - 275287 (-)
Gene ID: HRGMv2_2633_1_261
Type: TC
Location: 275572 - 277875 (+)
Type: TC
Location: 275572 - 277875 (+)
Gene ID: HRGMv2_2633_1_262
Type: sulfatase
Location: 277859 - 279403 (-)
Type: sulfatase
Location: 277859 - 279403 (-)
Gene ID: HRGMv2_2633_1_263
Type: TC
Location: 279434 - 281791 (-)
Type: TC
Location: 279434 - 281791 (-)
Gene ID: HRGMv2_2633_1_264
Type: CAZyme
Location: 282127 - 283899 (+)
Type: CAZyme
Location: 282127 - 283899 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Corynebacterium
Species
Corynebacterium sp902373425
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.