Cluster: HRGMv2_2632_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2632
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2632_1 | HRGMv2_2632_1_148 | 167154 | 169589 | + | 3.A.3.5.31 |
| pfam | HRGMv2_2632_1 | HRGMv2_2632_1_149 | 169586 | 169939 | + | Trns_repr_metal |
| pfam | HRGMv2_2632_1 | HRGMv2_2632_1_150 | 169979 | 171436 | - | Dyp_perox_N | Dyp_perox_C |
| TC | HRGMv2_2632_1 | HRGMv2_2632_1_151 | 171539 | 172879 | - | 2.A.108.2.3 |
| TC | HRGMv2_2632_1 | HRGMv2_2632_1_152 | 172938 | 173828 | - | 2.A.108.2.3 |
| CAZyme | HRGMv2_2632_1 | HRGMv2_2632_1_153 | 173930 | 174907 | - | GT2 |
| TC | HRGMv2_2632_1 | HRGMv2_2632_1_154 | 174978 | 175844 | - | 3.A.1.103.4 |
Gene ID: HRGMv2_2632_1_148
Type: TC
Location: 167154 - 169589 (+)
Type: TC
Location: 167154 - 169589 (+)
Gene ID: HRGMv2_2632_1_149
Type: pfam
Location: 169586 - 169939 (+)
Type: pfam
Location: 169586 - 169939 (+)
Gene ID: HRGMv2_2632_1_150
Type: pfam
Location: 169979 - 171436 (-)
Type: pfam
Location: 169979 - 171436 (-)
Gene ID: HRGMv2_2632_1_151
Type: TC
Location: 171539 - 172879 (-)
Type: TC
Location: 171539 - 172879 (-)
Gene ID: HRGMv2_2632_1_152
Type: TC
Location: 172938 - 173828 (-)
Type: TC
Location: 172938 - 173828 (-)
Gene ID: HRGMv2_2632_1_153
Type: CAZyme
Location: 173930 - 174907 (-)
Type: CAZyme
Location: 173930 - 174907 (-)
Gene ID: HRGMv2_2632_1_154
Type: TC
Location: 174978 - 175844 (-)
Type: TC
Location: 174978 - 175844 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Corynebacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.