Cluster: HRGMv2_2632_CGC16
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2632
- CGC Family ID: CGCFAM_02900
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2632_3 | HRGMv2_2632_3_248 | 262748 | 263953 | + | 4.D.2.4.1 |
| pfam | HRGMv2_2632_3 | HRGMv2_2632_3_249 | 264033 | 264554 | + | DUF3054 |
| TC | HRGMv2_2632_3 | HRGMv2_2632_3_250 | 264627 | 266129 | + | 2.A.17.1.7 |
| pfam | HRGMv2_2632_3 | HRGMv2_2632_3_251 | 266264 | 267715 | - | DUF963 |
| CAZyme | HRGMv2_2632_3 | HRGMv2_2632_3_252 | 268383 | 269330 | - | CE5 |
| NULL(UNKNOWN) | HRGMv2_2632_3 | HRGMv2_2632_3_253 | 269355 | 270017 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2632_3 | HRGMv2_2632_3_254 | 270138 | 272174 | - | CE1 |
| CAZyme | HRGMv2_2632_3 | HRGMv2_2632_3_255 | 272418 | 273608 | - | CE1 |
| pfam | HRGMv2_2632_3 | HRGMv2_2632_3_256 | 273887 | 274924 | - | UbiA |
| pfam | HRGMv2_2632_3 | HRGMv2_2632_3_257 | 275007 | 275546 | - | PAP2 | PAP2_3 |
| CAZyme | HRGMv2_2632_3 | HRGMv2_2632_3_258 | 275536 | 277623 | - | GT2 |
| peptidase | HRGMv2_2632_3 | HRGMv2_2632_3_259 | 277865 | 278806 | - | S09.UPW |
| NULL(UNKNOWN) | HRGMv2_2632_3 | HRGMv2_2632_3_260 | 278806 | 278940 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2632_3 | HRGMv2_2632_3_261 | 279208 | 281430 | + | 4.A.1.1.6 |
| sulfatase | HRGMv2_2632_3 | HRGMv2_2632_3_262 | 281414 | 282958 | - | S1_6 |
| TC | HRGMv2_2632_3 | HRGMv2_2632_3_263 | 282979 | 285345 | - | 2.A.15.1.4 |
| NULL(UNKNOWN) | HRGMv2_2632_3 | HRGMv2_2632_3_264 | 285524 | 285640 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2632_3 | HRGMv2_2632_3_265 | 285682 | 287454 | + | AA3_2 |
Gene ID: HRGMv2_2632_3_248
Type: TC
Location: 262748 - 263953 (+)
Type: TC
Location: 262748 - 263953 (+)
Gene ID: HRGMv2_2632_3_249
Type: pfam
Location: 264033 - 264554 (+)
Type: pfam
Location: 264033 - 264554 (+)
Gene ID: HRGMv2_2632_3_250
Type: TC
Location: 264627 - 266129 (+)
Type: TC
Location: 264627 - 266129 (+)
Gene ID: HRGMv2_2632_3_251
Type: pfam
Location: 266264 - 267715 (-)
Type: pfam
Location: 266264 - 267715 (-)
Gene ID: HRGMv2_2632_3_252
Type: CAZyme
Location: 268383 - 269330 (-)
Type: CAZyme
Location: 268383 - 269330 (-)
Gene ID: HRGMv2_2632_3_253
Type:
Location: 269355 - 270017 (-)
Type:
Location: 269355 - 270017 (-)
Gene ID: HRGMv2_2632_3_254
Type: CAZyme
Location: 270138 - 272174 (-)
Type: CAZyme
Location: 270138 - 272174 (-)
Gene ID: HRGMv2_2632_3_255
Type: CAZyme
Location: 272418 - 273608 (-)
Type: CAZyme
Location: 272418 - 273608 (-)
Gene ID: HRGMv2_2632_3_256
Type: pfam
Location: 273887 - 274924 (-)
Type: pfam
Location: 273887 - 274924 (-)
Gene ID: HRGMv2_2632_3_257
Type: pfam
Location: 275007 - 275546 (-)
Type: pfam
Location: 275007 - 275546 (-)
Gene ID: HRGMv2_2632_3_258
Type: CAZyme
Location: 275536 - 277623 (-)
Type: CAZyme
Location: 275536 - 277623 (-)
Gene ID: HRGMv2_2632_3_259
Type: peptidase
Location: 277865 - 278806 (-)
Type: peptidase
Location: 277865 - 278806 (-)
Gene ID: HRGMv2_2632_3_260
Type:
Location: 278806 - 278940 (-)
Type:
Location: 278806 - 278940 (-)
Gene ID: HRGMv2_2632_3_261
Type: TC
Location: 279208 - 281430 (+)
Type: TC
Location: 279208 - 281430 (+)
Gene ID: HRGMv2_2632_3_262
Type: sulfatase
Location: 281414 - 282958 (-)
Type: sulfatase
Location: 281414 - 282958 (-)
Gene ID: HRGMv2_2632_3_263
Type: TC
Location: 282979 - 285345 (-)
Type: TC
Location: 282979 - 285345 (-)
Gene ID: HRGMv2_2632_3_264
Type:
Location: 285524 - 285640 (-)
Type:
Location: 285524 - 285640 (-)
Gene ID: HRGMv2_2632_3_265
Type: CAZyme
Location: 285682 - 287454 (+)
Type: CAZyme
Location: 285682 - 287454 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Corynebacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.