Cluster: HRGMv2_2631_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2631
- CGC Family ID: CGCFAM_04061
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2631_5 | HRGMv2_2631_5_13 | 20229 | 22520 | + | 2.A.6.5.1 |
| TC | HRGMv2_2631_5 | HRGMv2_2631_5_14 | 22563 | 24770 | - | 4.A.1.2.2 |
| NULL(UNKNOWN) | HRGMv2_2631_5 | HRGMv2_2631_5_15 | 24948 | 25529 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2631_5 | HRGMv2_2631_5_16 | 25564 | 26148 | - | LMWPc |
| TC | HRGMv2_2631_5 | HRGMv2_2631_5_17 | 26164 | 27969 | - | 8.A.3.1.2 |
| NULL(UNKNOWN) | HRGMv2_2631_5 | HRGMv2_2631_5_18 | 27970 | 29217 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2631_5 | HRGMv2_2631_5_19 | 29385 | 30416 | - | GT4 |
Gene ID: HRGMv2_2631_5_13
Type: TC
Location: 20229 - 22520 (+)
Type: TC
Location: 20229 - 22520 (+)
Gene ID: HRGMv2_2631_5_14
Type: TC
Location: 22563 - 24770 (-)
Type: TC
Location: 22563 - 24770 (-)
Gene ID: HRGMv2_2631_5_15
Type:
Location: 24948 - 25529 (-)
Type:
Location: 24948 - 25529 (-)
Gene ID: HRGMv2_2631_5_16
Type: pfam
Location: 25564 - 26148 (-)
Type: pfam
Location: 25564 - 26148 (-)
Gene ID: HRGMv2_2631_5_17
Type: TC
Location: 26164 - 27969 (-)
Type: TC
Location: 26164 - 27969 (-)
Gene ID: HRGMv2_2631_5_18
Type:
Location: 27970 - 29217 (-)
Type:
Location: 27970 - 29217 (-)
Gene ID: HRGMv2_2631_5_19
Type: CAZyme
Location: 29385 - 30416 (-)
Type: CAZyme
Location: 29385 - 30416 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Corynebacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.