Cluster: HRGMv2_2629_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2629
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2629_3 | HRGMv2_2629_3_64 | 80762 | 82156 | + | GH27 |
| CAZyme | HRGMv2_2629_3 | HRGMv2_2629_3_65 | 82280 | 83482 | + | GH27 |
| CAZyme | HRGMv2_2629_3 | HRGMv2_2629_3_66 | 83495 | 84697 | + | GH27 |
| pfam | HRGMv2_2629_3 | HRGMv2_2629_3_67 | 84731 | 85858 | + | RF-1 | PCRF |
| TC | HRGMv2_2629_3 | HRGMv2_2629_3_68 | 86038 | 86952 | + | 1.A.23.3.1 |
| NULL(UNKNOWN) | HRGMv2_2629_3 | HRGMv2_2629_3_69 | 86949 | 87485 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2629_3 | HRGMv2_2629_3_70 | 87561 | 88247 | + | 3.A.1.140.1 |
Gene ID: HRGMv2_2629_3_64
Type: CAZyme
Location: 80762 - 82156 (+)
Type: CAZyme
Location: 80762 - 82156 (+)
Gene ID: HRGMv2_2629_3_65
Type: CAZyme
Location: 82280 - 83482 (+)
Type: CAZyme
Location: 82280 - 83482 (+)
Gene ID: HRGMv2_2629_3_66
Type: CAZyme
Location: 83495 - 84697 (+)
Type: CAZyme
Location: 83495 - 84697 (+)
Gene ID: HRGMv2_2629_3_67
Type: pfam
Location: 84731 - 85858 (+)
Type: pfam
Location: 84731 - 85858 (+)
Gene ID: HRGMv2_2629_3_68
Type: TC
Location: 86038 - 86952 (+)
Type: TC
Location: 86038 - 86952 (+)
Gene ID: HRGMv2_2629_3_69
Type:
Location: 86949 - 87485 (+)
Type:
Location: 86949 - 87485 (+)
Gene ID: HRGMv2_2629_3_70
Type: TC
Location: 87561 - 88247 (+)
Type: TC
Location: 87561 - 88247 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Lawsonella
Species
Lawsonella clevelandensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.