Cluster: HRGMv2_2628_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2628
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2628_1 | HRGMv2_2628_1_1020 | 1214121 | 1215212 | + | 9.B.146.1.6 |
| pfam | HRGMv2_2628_1 | HRGMv2_2628_1_1021 | 1215213 | 1216637 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_2628_1 | HRGMv2_2628_1_1022 | 1216679 | 1218478 | + | 2.A.103.1.4 |
| CAZyme | HRGMv2_2628_1 | HRGMv2_2628_1_1023 | 1218524 | 1219711 | + | GT28 |
Gene ID: HRGMv2_2628_1_1020
Type: TC
Location: 1214121 - 1215212 (+)
Type: TC
Location: 1214121 - 1215212 (+)
Gene ID: HRGMv2_2628_1_1021
Type: pfam
Location: 1215213 - 1216637 (+)
Type: pfam
Location: 1215213 - 1216637 (+)
Gene ID: HRGMv2_2628_1_1022
Type: TC
Location: 1216679 - 1218478 (+)
Type: TC
Location: 1216679 - 1218478 (+)
Gene ID: HRGMv2_2628_1_1023
Type: CAZyme
Location: 1218524 - 1219711 (+)
Type: CAZyme
Location: 1218524 - 1219711 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Lawsonella
Species
Lawsonella sp018376445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.