Cluster: HRGMv2_2628_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2628
- CGC Family ID: CGCFAM_10131
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2628_1 | HRGMv2_2628_1_47 | 48558 | 52562 | - | 3.A.24.3.1 |
| NULL(UNKNOWN) | HRGMv2_2628_1 | HRGMv2_2628_1_48 | 52848 | 54248 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2628_1 | HRGMv2_2628_1_49 | 54354 | 55733 | + | 3.A.24.4.1 |
| pfam | HRGMv2_2628_1 | HRGMv2_2628_1_50 | 55693 | 56865 | - | T7SS_ESX1_EccB | T7SS_ESX1_EccB |
| NULL(UNKNOWN) | HRGMv2_2628_1 | HRGMv2_2628_1_51 | 56957 | 58204 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2628_1 | HRGMv2_2628_1_52 | 58411 | 60165 | - | GH20 |
Gene ID: HRGMv2_2628_1_47
Type: TC
Location: 48558 - 52562 (-)
Type: TC
Location: 48558 - 52562 (-)
Gene ID: HRGMv2_2628_1_48
Type:
Location: 52848 - 54248 (+)
Type:
Location: 52848 - 54248 (+)
Gene ID: HRGMv2_2628_1_49
Type: TC
Location: 54354 - 55733 (+)
Type: TC
Location: 54354 - 55733 (+)
Gene ID: HRGMv2_2628_1_50
Type: pfam
Location: 55693 - 56865 (-)
Type: pfam
Location: 55693 - 56865 (-)
Gene ID: HRGMv2_2628_1_51
Type:
Location: 56957 - 58204 (+)
Type:
Location: 56957 - 58204 (+)
Gene ID: HRGMv2_2628_1_52
Type: CAZyme
Location: 58411 - 60165 (-)
Type: CAZyme
Location: 58411 - 60165 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Lawsonella
Species
Lawsonella sp018376445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.