Cluster: HRGMv2_2627_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2627
- CGC Family ID: CGCFAM_03685
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2627_13 | HRGMv2_2627_13_17 | 16661 | 17512 | - | 3.A.1.14.13 |
| CAZyme | HRGMv2_2627_13 | HRGMv2_2627_13_18 | 17571 | 19577 | + | GH13_3 |
| CAZyme | HRGMv2_2627_13 | HRGMv2_2627_13_19 | 19629 | 21749 | + | CBM48 | GH13_9 |
| pfam | HRGMv2_2627_13 | HRGMv2_2627_13_20 | 21771 | 22175 | - | LMWPc |
| TC | HRGMv2_2627_13 | HRGMv2_2627_13_21 | 22223 | 23800 | - | 3.A.1.5.35 |
| TC | HRGMv2_2627_13 | HRGMv2_2627_13_22 | 23921 | 25360 | - | 2.A.23.1.9 |
Gene ID: HRGMv2_2627_13_17
Type: TC
Location: 16661 - 17512 (-)
Type: TC
Location: 16661 - 17512 (-)
Gene ID: HRGMv2_2627_13_18
Type: CAZyme
Location: 17571 - 19577 (+)
Type: CAZyme
Location: 17571 - 19577 (+)
Gene ID: HRGMv2_2627_13_19
Type: CAZyme
Location: 19629 - 21749 (+)
Type: CAZyme
Location: 19629 - 21749 (+)
Gene ID: HRGMv2_2627_13_20
Type: pfam
Location: 21771 - 22175 (-)
Type: pfam
Location: 21771 - 22175 (-)
Gene ID: HRGMv2_2627_13_21
Type: TC
Location: 22223 - 23800 (-)
Type: TC
Location: 22223 - 23800 (-)
Gene ID: HRGMv2_2627_13_22
Type: TC
Location: 23921 - 25360 (-)
Type: TC
Location: 23921 - 25360 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Corynebacterium
Species
Corynebacterium striatum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.