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Cluster: HRGMv2_2623_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2623_15 HRGMv2_2623_15_3 6081 10457 - CBM32 | PL35
NULL(UNKNOWN) HRGMv2_2623_15 HRGMv2_2623_15_4 10454 13111 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2623_15 HRGMv2_2623_15_5 13172 14842 - SLH | SLH | SLH
TC HRGMv2_2623_15 HRGMv2_2623_15_6 14876 15754 - 3.A.1.1.10
TC HRGMv2_2623_15 HRGMv2_2623_15_7 15794 16780 - 3.A.1.1.10
TC HRGMv2_2623_15 HRGMv2_2623_15_8 16803 18383 - 3.A.1.1.10
TF HRGMv2_2623_15 HRGMv2_2623_15_9 18731 21058 + 0035607 | 0036286
TC HRGMv2_2623_15 HRGMv2_2623_15_10 21170 21802 + 9.B.98.2.1
pfam HRGMv2_2623_15 HRGMv2_2623_15_11 21909 22802 + Phage_integrase | Phage_int_SAM_1
pfam HRGMv2_2623_15 HRGMv2_2623_15_12 22876 24147 + GARS_A | CPSase_L_D2 | GARS_C | GARS_N | Dala_Dala_lig_C | RimK
CAZyme HRGMv2_2623_15 HRGMv2_2623_15_13 24256 27438 + GT39
Gene ID: HRGMv2_2623_15_3
Type: CAZyme
Location: 6081 - 10457 (-)
Gene ID: HRGMv2_2623_15_4
Type:
Location: 10454 - 13111 (-)
Gene ID: HRGMv2_2623_15_5
Type: pfam
Location: 13172 - 14842 (-)
Gene ID: HRGMv2_2623_15_6
Type: TC
Location: 14876 - 15754 (-)
Gene ID: HRGMv2_2623_15_7
Type: TC
Location: 15794 - 16780 (-)
Gene ID: HRGMv2_2623_15_8
Type: TC
Location: 16803 - 18383 (-)
Gene ID: HRGMv2_2623_15_9
Type: TF
Location: 18731 - 21058 (+)
Gene ID: HRGMv2_2623_15_10
Type: TC
Location: 21170 - 21802 (+)
Gene ID: HRGMv2_2623_15_11
Type: pfam
Location: 21909 - 22802 (+)
Gene ID: HRGMv2_2623_15_12
Type: pfam
Location: 22876 - 24147 (+)
Gene ID: HRGMv2_2623_15_13
Type: CAZyme
Location: 24256 - 27438 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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