dbCAN Logo

Cluster: HRGMv2_2623_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2623_10 HRGMv2_2623_10_2 117 1406 - GH28
CAZyme HRGMv2_2623_10 HRGMv2_2623_10_3 1403 4921 - GH141
CAZyme HRGMv2_2623_10 HRGMv2_2623_10_4 4967 9004 - GH141
NULL(UNKNOWN) HRGMv2_2623_10 HRGMv2_2623_10_5 9035 11686 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2623_10 HRGMv2_2623_10_6 11688 13145 - SLH | SLH | SLH
CAZyme HRGMv2_2623_10 HRGMv2_2623_10_7 13213 15054 - CE17
pfam HRGMv2_2623_10 HRGMv2_2623_10_8 15071 17287 - Big_5
STP HRGMv2_2623_10 HRGMv2_2623_10_9 17303 18751 - SBP_bac_1
TC HRGMv2_2623_10 HRGMv2_2623_10_10 18786 19682 - 3.A.1.1.29
pfam HRGMv2_2623_10 HRGMv2_2623_10_11 19711 20631 - BPD_transp_1
TC HRGMv2_2623_10 HRGMv2_2623_10_12 20839 22581 + 8.A.59.2.1
Gene ID: HRGMv2_2623_10_2
Type: CAZyme
Location: 117 - 1406 (-)
Gene ID: HRGMv2_2623_10_3
Type: CAZyme
Location: 1403 - 4921 (-)
Gene ID: HRGMv2_2623_10_4
Type: CAZyme
Location: 4967 - 9004 (-)
Gene ID: HRGMv2_2623_10_5
Type:
Location: 9035 - 11686 (-)
Gene ID: HRGMv2_2623_10_6
Type: pfam
Location: 11688 - 13145 (-)
Gene ID: HRGMv2_2623_10_7
Type: CAZyme
Location: 13213 - 15054 (-)
Gene ID: HRGMv2_2623_10_8
Type: pfam
Location: 15071 - 17287 (-)
Gene ID: HRGMv2_2623_10_9
Type: STP
Location: 17303 - 18751 (-)
Gene ID: HRGMv2_2623_10_10
Type: TC
Location: 18786 - 19682 (-)
Gene ID: HRGMv2_2623_10_11
Type: pfam
Location: 19711 - 20631 (-)
Gene ID: HRGMv2_2623_10_12
Type: TC
Location: 20839 - 22581 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List