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Cluster: HRGMv2_2623_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2623_5 HRGMv2_2623_5_30 58522 59484 + 3.A.1.1.10
TC HRGMv2_2623_5 HRGMv2_2623_5_31 59534 60424 + 3.A.1.1.10
TC HRGMv2_2623_5 HRGMv2_2623_5_32 60486 62114 + 3.A.1.1.10
CAZyme HRGMv2_2623_5 HRGMv2_2623_5_33 62130 63284 + GH88
TF HRGMv2_2623_5 HRGMv2_2623_5_34 63370 64800 - HTH_AraC | HTH_AraC
STP HRGMv2_2623_5 HRGMv2_2623_5_35 64793 66670 - HATPase_c | dCache_1
CAZyme HRGMv2_2623_5 HRGMv2_2623_5_36 66788 68833 - GH92
CAZyme HRGMv2_2623_5 HRGMv2_2623_5_37 68837 71506 - GH38
Gene ID: HRGMv2_2623_5_30
Type: TC
Location: 58522 - 59484 (+)
Gene ID: HRGMv2_2623_5_31
Type: TC
Location: 59534 - 60424 (+)
Gene ID: HRGMv2_2623_5_32
Type: TC
Location: 60486 - 62114 (+)
Gene ID: HRGMv2_2623_5_33
Type: CAZyme
Location: 62130 - 63284 (+)
Gene ID: HRGMv2_2623_5_34
Type: TF
Location: 63370 - 64800 (-)
Gene ID: HRGMv2_2623_5_35
Type: STP
Location: 64793 - 66670 (-)
Gene ID: HRGMv2_2623_5_36
Type: CAZyme
Location: 66788 - 68833 (-)
Gene ID: HRGMv2_2623_5_37
Type: CAZyme
Location: 68837 - 71506 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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