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Cluster: HRGMv2_2623_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2623_5 HRGMv2_2623_5_8 13891 15405 - GH36
CAZyme HRGMv2_2623_5 HRGMv2_2623_5_9 15422 18103 - GH38
TF HRGMv2_2623_5 HRGMv2_2623_5_10 18213 20552 - 0035607 | 0035607
TC HRGMv2_2623_5 HRGMv2_2623_5_11 20634 21515 - 3.A.1.1.10
TC HRGMv2_2623_5 HRGMv2_2623_5_12 21558 22496 - 3.A.1.1.10
TC HRGMv2_2623_5 HRGMv2_2623_5_13 22619 24169 - 3.A.1.1.9
CAZyme HRGMv2_2623_5 HRGMv2_2623_5_14 24192 25226 - GH105
NULL(UNKNOWN) HRGMv2_2623_5 HRGMv2_2623_5_15 25241 27586 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2623_5 HRGMv2_2623_5_16 27719 30370 - Big_5
CAZyme HRGMv2_2623_5 HRGMv2_2623_5_17 30381 34793 - PL35
Gene ID: HRGMv2_2623_5_8
Type: CAZyme
Location: 13891 - 15405 (-)
Gene ID: HRGMv2_2623_5_9
Type: CAZyme
Location: 15422 - 18103 (-)
Gene ID: HRGMv2_2623_5_10
Type: TF
Location: 18213 - 20552 (-)
Gene ID: HRGMv2_2623_5_11
Type: TC
Location: 20634 - 21515 (-)
Gene ID: HRGMv2_2623_5_12
Type: TC
Location: 21558 - 22496 (-)
Gene ID: HRGMv2_2623_5_13
Type: TC
Location: 22619 - 24169 (-)
Gene ID: HRGMv2_2623_5_14
Type: CAZyme
Location: 24192 - 25226 (-)
Gene ID: HRGMv2_2623_5_15
Type:
Location: 25241 - 27586 (-)
Gene ID: HRGMv2_2623_5_16
Type: pfam
Location: 27719 - 30370 (-)
Gene ID: HRGMv2_2623_5_17
Type: CAZyme
Location: 30381 - 34793 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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