Cluster: HRGMv2_2621_CGC42
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2621
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2621_61 | HRGMv2_2621_61_1 | 139 | 540 | + | 3.A.1.1.10 |
| pfam | HRGMv2_2621_61 | HRGMv2_2621_61_2 | 598 | 1134 | - | rve |
| TF | HRGMv2_2621_61 | HRGMv2_2621_61_3 | 1723 | 3957 | + | HTH_AraC |
| TC | HRGMv2_2621_61 | HRGMv2_2621_61_4 | 4141 | 5085 | + | 3.A.1.1.10 |
| TC | HRGMv2_2621_61 | HRGMv2_2621_61_5 | 5098 | 5967 | + | 3.A.1.1.10 |
| TC | HRGMv2_2621_61 | HRGMv2_2621_61_6 | 5988 | 7535 | + | 3.A.1.1.10 |
| pfam | HRGMv2_2621_61 | HRGMv2_2621_61_7 | 7554 | 10121 | + | SLH |
| pfam | HRGMv2_2621_61 | HRGMv2_2621_61_8 | 10134 | 11393 | + | SLH | SLH | SLH |
| CAZyme | HRGMv2_2621_61 | HRGMv2_2621_61_9 | 11401 | 14424 | + | CBM32 | PL35 |
| pfam | HRGMv2_2621_61 | HRGMv2_2621_61_10 | 14427 | 16640 | + | Big_5 | Big_5 |
| CAZyme | HRGMv2_2621_61 | HRGMv2_2621_61_11 | 16653 | 19577 | + | PL35 |
| pfam | HRGMv2_2621_61 | HRGMv2_2621_61_12 | 19561 | 20490 | + | Metallophos |
| CAZyme | HRGMv2_2621_61 | HRGMv2_2621_61_13 | 20487 | 22226 | + | GH110 |
Gene ID: HRGMv2_2621_61_1
Type: TC
Location: 139 - 540 (+)
Type: TC
Location: 139 - 540 (+)
Gene ID: HRGMv2_2621_61_2
Type: pfam
Location: 598 - 1134 (-)
Type: pfam
Location: 598 - 1134 (-)
Gene ID: HRGMv2_2621_61_3
Type: TF
Location: 1723 - 3957 (+)
Type: TF
Location: 1723 - 3957 (+)
Gene ID: HRGMv2_2621_61_4
Type: TC
Location: 4141 - 5085 (+)
Type: TC
Location: 4141 - 5085 (+)
Gene ID: HRGMv2_2621_61_5
Type: TC
Location: 5098 - 5967 (+)
Type: TC
Location: 5098 - 5967 (+)
Gene ID: HRGMv2_2621_61_6
Type: TC
Location: 5988 - 7535 (+)
Type: TC
Location: 5988 - 7535 (+)
Gene ID: HRGMv2_2621_61_7
Type: pfam
Location: 7554 - 10121 (+)
Type: pfam
Location: 7554 - 10121 (+)
Gene ID: HRGMv2_2621_61_8
Type: pfam
Location: 10134 - 11393 (+)
Type: pfam
Location: 10134 - 11393 (+)
Gene ID: HRGMv2_2621_61_9
Type: CAZyme
Location: 11401 - 14424 (+)
Type: CAZyme
Location: 11401 - 14424 (+)
Gene ID: HRGMv2_2621_61_10
Type: pfam
Location: 14427 - 16640 (+)
Type: pfam
Location: 14427 - 16640 (+)
Gene ID: HRGMv2_2621_61_11
Type: CAZyme
Location: 16653 - 19577 (+)
Type: CAZyme
Location: 16653 - 19577 (+)
Gene ID: HRGMv2_2621_61_12
Type: pfam
Location: 19561 - 20490 (+)
Type: pfam
Location: 19561 - 20490 (+)
Gene ID: HRGMv2_2621_61_13
Type: CAZyme
Location: 20487 - 22226 (+)
Type: CAZyme
Location: 20487 - 22226 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Monoglobales
Family
Monoglobaceae
Genus
Ructibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.