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Cluster: HRGMv2_2620_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2620_5 HRGMv2_2620_5_14 16954 17928 + 3.A.1.15.11
pfam HRGMv2_2620_5 HRGMv2_2620_5_15 17950 19209 + FAD_binding_2 | GIDA | GIDA | HI0933_like | FAD_oxidored | HI0933_like_1st
TC HRGMv2_2620_5 HRGMv2_2620_5_16 19162 20247 - 9.B.97.1.5
pfam HRGMv2_2620_5 HRGMv2_2620_5_17 20426 22663 + Gly_radical | PFL-like
pfam HRGMv2_2620_5 HRGMv2_2620_5_18 23013 23840 + Radical_SAM | Fer4_12
TC HRGMv2_2620_5 HRGMv2_2620_5_19 23916 24485 + 2.A.107.1.2
pfam HRGMv2_2620_5 HRGMv2_2620_5_20 24508 25239 + DUF6062
pfam HRGMv2_2620_5 HRGMv2_2620_5_21 25256 25897 + YjeF_N
CAZyme HRGMv2_2620_5 HRGMv2_2620_5_22 25945 27255 - GH13_20
Gene ID: HRGMv2_2620_5_14
Type: TC
Location: 16954 - 17928 (+)
Gene ID: HRGMv2_2620_5_15
Type: pfam
Location: 17950 - 19209 (+)
Gene ID: HRGMv2_2620_5_16
Type: TC
Location: 19162 - 20247 (-)
Gene ID: HRGMv2_2620_5_17
Type: pfam
Location: 20426 - 22663 (+)
Gene ID: HRGMv2_2620_5_18
Type: pfam
Location: 23013 - 23840 (+)
Gene ID: HRGMv2_2620_5_19
Type: TC
Location: 23916 - 24485 (+)
Gene ID: HRGMv2_2620_5_20
Type: pfam
Location: 24508 - 25239 (+)
Gene ID: HRGMv2_2620_5_21
Type: pfam
Location: 25256 - 25897 (+)
Gene ID: HRGMv2_2620_5_22
Type: CAZyme
Location: 25945 - 27255 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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