dbCAN HGM

Cluster: HRGMv2_2616_CGC28

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_2616_19	HRGMv2_2616_19_276	316807	320046	+	PL1_2
pfam	HRGMv2_2616_19	HRGMv2_2616_19_277	320081	320704	+	Cu_amine_oxidN1
TC	HRGMv2_2616_19	HRGMv2_2616_19_278	321270	321842	+	3.A.1.25.5
pfam	HRGMv2_2616_19	HRGMv2_2616_19_279	322272	324644	+	XFP \| XFP_C \| XFP_N
CAZyme	HRGMv2_2616_19	HRGMv2_2616_19_280	324872	326842	+	GH51_2
CAZyme	HRGMv2_2616_19	HRGMv2_2616_19_281	327521	328564	+	GH33
CAZyme	HRGMv2_2616_19	HRGMv2_2616_19_282	328577	331672	+	GH106
TF	HRGMv2_2616_19	HRGMv2_2616_19_283	331748	333112	-	GntR
CAZyme	HRGMv2_2616_19	HRGMv2_2616_19_284	333282	337427	+	GH95
CAZyme	HRGMv2_2616_19	HRGMv2_2616_19_285	337409	339343	+	CE8

Gene ID: HRGMv2_2616_19_276
Type: CAZyme
Location: 316807 - 320046 (+)

Gene ID: HRGMv2_2616_19_277
Type: pfam
Location: 320081 - 320704 (+)

Gene ID: HRGMv2_2616_19_278
Type: TC
Location: 321270 - 321842 (+)

Gene ID: HRGMv2_2616_19_279
Type: pfam
Location: 322272 - 324644 (+)

Gene ID: HRGMv2_2616_19_280
Type: CAZyme
Location: 324872 - 326842 (+)

Gene ID: HRGMv2_2616_19_281
Type: CAZyme
Location: 327521 - 328564 (+)

Gene ID: HRGMv2_2616_19_282
Type: CAZyme
Location: 328577 - 331672 (+)

Gene ID: HRGMv2_2616_19_283
Type: TF
Location: 331748 - 333112 (-)

Gene ID: HRGMv2_2616_19_284
Type: CAZyme
Location: 333282 - 337427 (+)

Gene ID: HRGMv2_2616_19_285
Type: CAZyme
Location: 337409 - 339343 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.