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Cluster: HRGMv2_2616_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2616_18 HRGMv2_2616_18_38 54387 55967 + 3.A.2.1.5
TC HRGMv2_2616_18 HRGMv2_2616_18_39 55982 56872 + 3.A.2.1.5
TC HRGMv2_2616_18 HRGMv2_2616_18_40 56927 58309 + 3.A.2.1.5
TC HRGMv2_2616_18 HRGMv2_2616_18_41 58350 58766 + 3.A.2.1.5
pfam HRGMv2_2616_18 HRGMv2_2616_18_42 58945 59424 + Y1_Tnp
pfam HRGMv2_2616_18 HRGMv2_2616_18_43 59774 60070 + DUF1330
CAZyme HRGMv2_2616_18 HRGMv2_2616_18_44 60162 64265 - CBM32 | CBM6
TF HRGMv2_2616_18 HRGMv2_2616_18_45 64426 65232 + HTH_AraC
TC HRGMv2_2616_18 HRGMv2_2616_18_46 65637 67553 - 3.A.1.135.5
TC HRGMv2_2616_18 HRGMv2_2616_18_47 67555 69285 - 3.A.1.135.5
Gene ID: HRGMv2_2616_18_38
Type: TC
Location: 54387 - 55967 (+)
Gene ID: HRGMv2_2616_18_39
Type: TC
Location: 55982 - 56872 (+)
Gene ID: HRGMv2_2616_18_40
Type: TC
Location: 56927 - 58309 (+)
Gene ID: HRGMv2_2616_18_41
Type: TC
Location: 58350 - 58766 (+)
Gene ID: HRGMv2_2616_18_42
Type: pfam
Location: 58945 - 59424 (+)
Gene ID: HRGMv2_2616_18_43
Type: pfam
Location: 59774 - 60070 (+)
Gene ID: HRGMv2_2616_18_44
Type: CAZyme
Location: 60162 - 64265 (-)
Gene ID: HRGMv2_2616_18_45
Type: TF
Location: 64426 - 65232 (+)
Gene ID: HRGMv2_2616_18_46
Type: TC
Location: 65637 - 67553 (-)
Gene ID: HRGMv2_2616_18_47
Type: TC
Location: 67555 - 69285 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2616_18_42 vegetarian > omnivore 1.10611 0.03761
HRGMv2_2616_18_42 vegetarian > vegan 1.18942 0.00855

🧭 Explore Read Mapping of CGC

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