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Cluster: HRGMv2_2615_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2615_6 HRGMv2_2615_6_14 13413 16424 + GH38
pfam HRGMv2_2615_6 HRGMv2_2615_6_15 16480 22437 - Polysacc_deac_1
TF HRGMv2_2615_6 HRGMv2_2615_6_16 22674 23621 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2615_6 HRGMv2_2615_6_17 23808 28028 + CBM32 | PL35
CAZyme HRGMv2_2615_6 HRGMv2_2615_6_18 28076 29281 - CE4
TC HRGMv2_2615_6 HRGMv2_2615_6_19 29625 31100 - 3.A.1.121.4
CAZyme HRGMv2_2615_6 HRGMv2_2615_6_20 31357 32400 - GH179
NULL(UNKNOWN) HRGMv2_2615_6 HRGMv2_2615_6_21 32536 32673 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2615_6 HRGMv2_2615_6_22 32698 33849 - 3.B.1.1.5
Gene ID: HRGMv2_2615_6_14
Type: CAZyme
Location: 13413 - 16424 (+)
Gene ID: HRGMv2_2615_6_15
Type: pfam
Location: 16480 - 22437 (-)
Gene ID: HRGMv2_2615_6_16
Type: TF
Location: 22674 - 23621 (+)
Gene ID: HRGMv2_2615_6_17
Type: CAZyme
Location: 23808 - 28028 (+)
Gene ID: HRGMv2_2615_6_18
Type: CAZyme
Location: 28076 - 29281 (-)
Gene ID: HRGMv2_2615_6_19
Type: TC
Location: 29625 - 31100 (-)
Gene ID: HRGMv2_2615_6_20
Type: CAZyme
Location: 31357 - 32400 (-)
Gene ID: HRGMv2_2615_6_21
Type:
Location: 32536 - 32673 (-)
Gene ID: HRGMv2_2615_6_22
Type: TC
Location: 32698 - 33849 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
UBA1381
→
Family
UMGS1253
→
Genus
Aphodoplasma
→
Species
Aphodoplasma sp900550065

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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