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Cluster: HRGMv2_2615_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2615_18 HRGMv2_2615_18_16 23543 24958 - 3.B.1.1.6
TC HRGMv2_2615_18 HRGMv2_2615_18_17 25001 26233 - 3.B.1.1.2
TC HRGMv2_2615_18 HRGMv2_2615_18_18 26293 26661 - 3.B.1.1.3
pfam HRGMv2_2615_18 HRGMv2_2615_18_19 26719 27033 - OAD_gamma
TC HRGMv2_2615_18 HRGMv2_2615_18_20 27085 28650 - 3.B.1.1.5
NULL(UNKNOWN) HRGMv2_2615_18 HRGMv2_2615_18_21 28862 29227 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2615_18 HRGMv2_2615_18_22 29238 29966 - PseudoU_synth_2 | S4
CAZyme HRGMv2_2615_18 HRGMv2_2615_18_23 30180 32945 - CBM32 | PL21
Gene ID: HRGMv2_2615_18_16
Type: TC
Location: 23543 - 24958 (-)
Gene ID: HRGMv2_2615_18_17
Type: TC
Location: 25001 - 26233 (-)
Gene ID: HRGMv2_2615_18_18
Type: TC
Location: 26293 - 26661 (-)
Gene ID: HRGMv2_2615_18_19
Type: pfam
Location: 26719 - 27033 (-)
Gene ID: HRGMv2_2615_18_20
Type: TC
Location: 27085 - 28650 (-)
Gene ID: HRGMv2_2615_18_21
Type:
Location: 28862 - 29227 (-)
Gene ID: HRGMv2_2615_18_22
Type: pfam
Location: 29238 - 29966 (-)
Gene ID: HRGMv2_2615_18_23
Type: CAZyme
Location: 30180 - 32945 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
UBA1381
→
Family
UMGS1253
→
Genus
Aphodoplasma
→
Species
Aphodoplasma sp900550065

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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